Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPOK310_RS07245 Genome accession   NC_020509
Coordinates   1494854..1495117 (-) Length   87 a.a.
NCBI ID   WP_015429551.1    Uniprot ID   -
Organism   Helicobacter pylori OK310     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1489854..1500117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS07225 (HPOK310_1393) - 1490739..1491908 (-) 1170 WP_015429547.1 VirB8/TrbF family protein -
  HPOK310_RS07230 (HPOK310_1394) - 1491901..1492035 (-) 135 WP_015429548.1 hypothetical protein -
  HPOK310_RS07235 (HPOK310_1395) - 1492032..1494607 (-) 2576 Protein_1408 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPOK310_RS07240 (HPOK310_1397) - 1494607..1494843 (-) 237 WP_001183709.1 hypothetical protein -
  HPOK310_RS07245 (HPOK310_1398) comB3 1494854..1495117 (-) 264 WP_015429551.1 hypothetical protein Machinery gene
  HPOK310_RS07250 (HPOK310_1399) comB2 1495128..1495412 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPOK310_RS07255 (HPOK310_1400) - 1495409..1495888 (-) 480 WP_015429552.1 hypothetical protein -
  HPOK310_RS07260 (HPOK310_1401) - 1495992..1496780 (-) 789 WP_015429553.1 hypothetical protein -
  HPOK310_RS07265 (HPOK310_1402) - 1496831..1497333 (-) 503 Protein_1414 hypothetical protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10020.92 Da        Isoelectric Point: 5.7206

>NTDB_id=56654 HPOK310_RS07245 WP_015429551.1 1494854..1495117(-) (comB3) [Helicobacter pylori OK310]
MQLVGISVSNLKEISSKEKFLWLNAKSFLIAGFIPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDMSDILIAHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=56654 HPOK310_RS07245 WP_015429551.1 1494854..1495117(-) (comB3) [Helicobacter pylori OK310]
ATGCAATTAGTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTAATCGCAGGATTTATTCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATGAGCGACATTTTAATCGCCCATTCCAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

58.621

100

0.586

Multiple sequence alignment