Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM24_RS20935 Genome accession   NZ_CP074859
Coordinates   4200751..4201380 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C_3964     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4195751..4206380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM24_RS20915 (KIM24_20740) ycbZ 4196153..4197913 (-) 1761 WP_032344991.1 AAA family ATPase -
  KIM24_RS20920 (KIM24_20745) matP 4198099..4198551 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM24_RS20925 (KIM24_20750) ompA 4198626..4199666 (-) 1041 WP_000750416.1 porin OmpA -
  KIM24_RS20930 (KIM24_20755) sulA 4200023..4200532 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM24_RS20935 (KIM24_20760) sxy/tfoX 4200751..4201380 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM24_RS20940 (KIM24_20765) yccS 4201343..4203505 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM24_RS20945 (KIM24_20770) yccF 4203515..4203961 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIM24_RS20950 (KIM24_20775) helD 4204084..4206138 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566498 KIM24_RS20935 WP_000839153.1 4200751..4201380(+) (sxy/tfoX) [Escherichia coli strain 2013C_3964]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566498 KIM24_RS20935 WP_000839153.1 4200751..4201380(+) (sxy/tfoX) [Escherichia coli strain 2013C_3964]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1