Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM33_RS09415 Genome accession   NZ_CP074824
Coordinates   1960341..1960970 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 7_29_23A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1955341..1965970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM33_RS09395 (KIM33_09280) ycbZ 1955743..1957503 (-) 1761 WP_032344991.1 AAA family ATPase -
  KIM33_RS09400 (KIM33_09285) matP 1957689..1958141 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM33_RS09405 (KIM33_09290) ompA 1958216..1959256 (-) 1041 WP_000750416.1 porin OmpA -
  KIM33_RS09410 (KIM33_09295) sulA 1959613..1960122 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM33_RS09415 (KIM33_09300) sxy/tfoX 1960341..1960970 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM33_RS09420 (KIM33_09305) yccS 1960933..1963095 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM33_RS09425 (KIM33_09310) yccF 1963105..1963551 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIM33_RS09430 (KIM33_09315) helD 1963674..1965728 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566293 KIM33_RS09415 WP_000839153.1 1960341..1960970(+) (sxy/tfoX) [Escherichia coli strain 7_29_23A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566293 KIM33_RS09415 WP_000839153.1 1960341..1960970(+) (sxy/tfoX) [Escherichia coli strain 7_29_23A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1