Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM34_RS17660 Genome accession   NZ_CP074819
Coordinates   3448623..3449252 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 7_33_46A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3443623..3454252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM34_RS17645 (KIM34_17505) helD 3443865..3445919 (-) 2055 WP_001297106.1 DNA helicase IV -
  KIM34_RS17650 (KIM34_17510) yccF 3446042..3446488 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIM34_RS17655 (KIM34_17515) yccS 3446498..3448660 (+) 2163 WP_000875022.1 YccS family putative transporter -
  KIM34_RS17660 (KIM34_17520) sxy/tfoX 3448623..3449252 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM34_RS17665 (KIM34_17525) sulA 3449471..3449980 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM34_RS17670 (KIM34_17530) ompA 3450337..3451377 (+) 1041 WP_001400178.1 porin OmpA -
  KIM34_RS17675 (KIM34_17535) matP 3451453..3451905 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM34_RS17680 (KIM34_17540) ycbZ 3452091..3453851 (+) 1761 WP_000156528.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566281 KIM34_RS17660 WP_000839153.1 3448623..3449252(-) (sxy/tfoX) [Escherichia coli strain 7_33_46A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566281 KIM34_RS17660 WP_000839153.1 3448623..3449252(-) (sxy/tfoX) [Escherichia coli strain 7_33_46A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1