Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM35_RS09765 Genome accession   NZ_CP074815
Coordinates   2006073..2006702 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 7_33_80A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2001073..2011702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM35_RS09745 (KIM35_09625) ycbZ 2001475..2003235 (-) 1761 WP_032344991.1 AAA family ATPase -
  KIM35_RS09750 (KIM35_09630) matP 2003421..2003873 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM35_RS09755 (KIM35_09635) ompA 2003948..2004988 (-) 1041 WP_000750416.1 porin OmpA -
  KIM35_RS09760 (KIM35_09640) sulA 2005345..2005854 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM35_RS09765 (KIM35_09645) sxy/tfoX 2006073..2006702 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM35_RS09770 (KIM35_09650) yccS 2006665..2008827 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM35_RS09775 (KIM35_09655) yccF 2008837..2009283 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIM35_RS09780 (KIM35_09660) helD 2009406..2011460 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566251 KIM35_RS09765 WP_000839153.1 2006073..2006702(+) (sxy/tfoX) [Escherichia coli strain 7_33_80A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566251 KIM35_RS09765 WP_000839153.1 2006073..2006702(+) (sxy/tfoX) [Escherichia coli strain 7_33_80A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1