Detailed information NTG0056621

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPOK113_RS02655
• Genome accession: NC_020508
• Coordinates: 536724..537926 (+)
• Length: 400 a.a.
• NCBI ID: WP_041199687.1
• Uniprot ID: -
• Organism: Helicobacter pylori OK113
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 531724..542926

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOK113_RS02625 (HPOK113_0513)	-	532085..532738 (+)	654	WP_041199685.1	IS607-like element IS607 family transposase	-
HPOK113_RS02630	-	532713..533972 (+)	1260	Protein_517	RNA-guided endonuclease InsQ/TnpB family protein	-
HPOK113_RS02635 (HPOK113_0516)	-	534233..535033 (-)	801	WP_015427681.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	-
HPOK113_RS02640 (HPOK113_0517)	-	535003..535473 (-)	471	WP_015427682.1	hypothetical protein	-
HPOK113_RS02645 (HPOK113_0518)	-	535528..536040 (-)	513	Protein_520	type IA DNA topoisomerase	-
HPOK113_RS02650	-	536038..536727 (+)	690	Protein_521	TrbG/VirB9 family P-type conjugative transfer protein	-
HPOK113_RS02655 (HPOK113_0520)	comB10	536724..537926 (+)	1203	WP_041199687.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOK113_RS02660 (HPOK113_0521)	-	537910..540171 (+)	2262	WP_041199688.1	hypothetical protein	-
HPOK113_RS02665 (HPOK113_0522)	-	540184..541166 (+)	983	Protein_524	hypothetical protein	-
HPOK113_RS02670 (HPOK113_0523)	-	541184..541456 (+)	273	WP_015427688.1	hypothetical protein	-
HPOK113_RS02675 (HPOK113_0524)	-	541461..542405 (+)	945	WP_015427689.1	CpaF/VirB11 family protein	-
HPOK113_RS02680 (HPOK113_0525)	-	542402..542920 (+)	519	WP_015427690.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44700.32 Da
• Isoelectric Point: 9.9914

>NTDB_id=56621 HPOK113_RS02655 WP_041199687.1 536724..537926(+) (comB10) [Helicobacter pylori OK113]
MNKSLLKKIGLVIGGFGALMALGLLANKGSDNNNKEEIFQVNESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLESTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=56621 HPOK113_RS02655 WP_041199687.1 536724..537926(+) (comB10) [Helicobacter pylori OK113]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAGACAATAACAATAAAGAAGAAATCTTTCAAGTAAATGAGAGTAAATTCCCACTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAATCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCTG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACTCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGGCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGTATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGTCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTCCTAGCGGAGTTTTTTAAAGAGAAAAAACCGCTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.518	99.5	0.533