Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOK113_RS00225 Genome accession   NC_020508
Coordinates   40731..42044 (+) Length   437 a.a.
NCBI ID   WP_015427278.1    Uniprot ID   -
Organism   Helicobacter pylori OK113     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 35731..47044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK113_RS07925 (HPOK113_0032) - 35754..35975 (+) 222 Protein_33 restriction endonuclease -
  HPOK113_RS00205 (HPOK113_0033) crdR 36057..36698 (+) 642 WP_001169802.1 copper response regulator transcription factor CrdR -
  HPOK113_RS00210 (HPOK113_0034) crdS 36664..37866 (+) 1203 WP_080105154.1 copper-sensing histidine kinase CrdS -
  HPOK113_RS00215 (HPOK113_0035) - 37869..39263 (+) 1395 WP_015427276.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOK113_RS00220 (HPOK113_0036) - 39274..40734 (+) 1461 WP_015427277.1 replicative DNA helicase -
  HPOK113_RS00225 (HPOK113_0037) comEC/comE3 40731..42044 (+) 1314 WP_015427278.1 ComEC/Rec2 family competence protein Machinery gene
  HPOK113_RS00230 (HPOK113_0038) mqnP 42115..42957 (+) 843 WP_232501602.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOK113_RS00235 (HPOK113_0039) - 42950..43444 (+) 495 WP_015427279.1 hypothetical protein -
  HPOK113_RS00240 (HPOK113_0040) - 43457..43960 (+) 504 WP_000953102.1 DUF6115 domain-containing protein -
  HPOK113_RS00245 (HPOK113_0041) - 43957..44763 (+) 807 WP_015427280.1 phosphatidylserine decarboxylase -
  HPOK113_RS00250 (HPOK113_0042) nadA 44750..45760 (+) 1011 WP_015427281.1 quinolinate synthase NadA -
  HPOK113_RS00255 (HPOK113_0043) nadC 45760..46581 (+) 822 WP_015427282.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50165.17 Da        Isoelectric Point: 9.8918

>NTDB_id=56617 HPOK113_RS00225 WP_015427278.1 40731..42044(+) (comEC/comE3) [Helicobacter pylori OK113]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHVRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
TLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLWSLLDGILNMPLAIPTISVSSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=56617 HPOK113_RS00225 WP_015427278.1 40731..42044(+) (comEC/comE3) [Helicobacter pylori OK113]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCGTTTCATTGATAGCGCCCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCATG
TTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGTGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCACAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936

Multiple sequence alignment