Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM40_RS18970 Genome accession   NZ_CP074785
Coordinates   3639295..3639924 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 95_0274     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3628217..3651097 3639295..3639924 within 0


Gene organization within MGE regions


Location: 3628217..3651097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM40_RS18910 (KIM40_18715) - 3628217..3629236 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  KIM40_RS18915 (KIM40_18720) yccA 3629644..3630303 (+) 660 WP_000375138.1 FtsH protease modulator YccA -
  KIM40_RS18920 (KIM40_18725) tusE 3630394..3630723 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  KIM40_RS18925 (KIM40_18730) yccX 3630720..3630998 (-) 279 WP_000048244.1 acylphosphatase -
  KIM40_RS18930 (KIM40_18735) rlmI 3631093..3632283 (+) 1191 WP_000116301.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  KIM40_RS18935 (KIM40_18740) hspQ 3632341..3632658 (+) 318 WP_001295356.1 heat shock protein HspQ -
  KIM40_RS18940 (KIM40_18745) yccU 3632703..3633116 (-) 414 WP_000665217.1 CoA-binding protein -
  KIM40_RS18945 (KIM40_18750) csgI 3633289..3633951 (+) 663 WP_000847791.1 DUF2057 family protein -
  KIM40_RS18950 (KIM40_18755) mgsA 3634047..3634505 (+) 459 WP_000424181.1 methylglyoxal synthase -
  KIM40_RS18955 (KIM40_18760) helD 3634537..3636591 (-) 2055 WP_001297106.1 DNA helicase IV -
  KIM40_RS18960 (KIM40_18765) yccF 3636714..3637160 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIM40_RS18965 (KIM40_18770) yccS 3637170..3639332 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KIM40_RS18970 (KIM40_18775) sxy/tfoX 3639295..3639924 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM40_RS18975 (KIM40_18780) sulA 3640143..3640652 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM40_RS18980 (KIM40_18785) ompA 3641009..3642049 (+) 1041 WP_000750416.1 porin OmpA -
  KIM40_RS18985 (KIM40_18790) matP 3642124..3642576 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM40_RS18990 (KIM40_18795) ycbZ 3642762..3644522 (+) 1761 WP_000156528.1 AAA family ATPase -
  KIM40_RS18995 (KIM40_18800) fabA 3644591..3645109 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  KIM40_RS19000 (KIM40_18805) rmf 3645179..3645346 (-) 168 WP_000828648.1 ribosome modulation factor -
  KIM40_RS19005 (KIM40_18810) pqiC 3645602..3646165 (-) 564 WP_000759122.1 membrane integrity-associated transporter subunit PqiC -
  KIM40_RS19010 (KIM40_18815) pqiB 3646162..3647802 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  KIM40_RS19015 (KIM40_18820) pqiA 3647807..3649060 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  KIM40_RS19020 (KIM40_18825) uup 3649190..3651097 (-) 1908 WP_000053122.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566151 KIM40_RS18970 WP_000839153.1 3639295..3639924(-) (sxy/tfoX) [Escherichia coli strain 95_0274]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566151 KIM40_RS18970 WP_000839153.1 3639295..3639924(-) (sxy/tfoX) [Escherichia coli strain 95_0274]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1