Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | KIM41_RS20230 | Genome accession | NZ_CP074781 |
| Coordinates | 3813139..3813768 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain 96_1414B | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3787944..3826271 | 3813139..3813768 | within | 0 |
Gene organization within MGE regions
Location: 3787944..3826271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIM41_RS20025 (KIM41_19760) | - | 3788165..3788437 (-) | 273 | WP_001342259.1 | hypothetical protein | - |
| KIM41_RS20030 (KIM41_19765) | - | 3788573..3788830 (+) | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| KIM41_RS20035 (KIM41_19770) | - | 3788836..3789135 (+) | 300 | WP_000220601.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KIM41_RS20040 (KIM41_19775) | - | 3789340..3789684 (-) | 345 | WP_000206830.1 | hypothetical protein | - |
| KIM41_RS20045 (KIM41_19780) | - | 3789681..3790046 (-) | 366 | WP_001229296.1 | HNH endonuclease | - |
| KIM41_RS20050 (KIM41_19785) | - | 3790048..3790266 (-) | 219 | WP_000209152.1 | DUF4014 family protein | - |
| KIM41_RS20055 (KIM41_19790) | - | 3790477..3790989 (-) | 513 | Protein_3936 | ead/Ea22-like family protein | - |
| KIM41_RS20060 (KIM41_19795) | - | 3790986..3791162 (-) | 177 | WP_000753069.1 | hypothetical protein | - |
| KIM41_RS20065 (KIM41_19800) | - | 3791155..3791337 (-) | 183 | WP_001224662.1 | DUF7167 family protein | - |
| KIM41_RS20070 (KIM41_19805) | - | 3791371..3791583 (-) | 213 | WP_000935422.1 | hypothetical protein | - |
| KIM41_RS20075 (KIM41_19810) | - | 3791634..3791990 (-) | 357 | WP_000403783.1 | hypothetical protein | - |
| KIM41_RS20080 (KIM41_19815) | - | 3791968..3792429 (-) | 462 | WP_001209480.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| KIM41_RS20085 (KIM41_19820) | - | 3792426..3792722 (-) | 297 | WP_001266133.1 | DUF4406 domain-containing protein | - |
| KIM41_RS20090 (KIM41_19825) | - | 3792719..3793111 (-) | 393 | WP_001040234.1 | DUF977 family protein | - |
| KIM41_RS20095 (KIM41_19830) | - | 3793127..3793852 (-) | 726 | WP_000450641.1 | DUF1627 domain-containing protein | - |
| KIM41_RS20100 (KIM41_19835) | - | 3793886..3794347 (-) | 462 | WP_000139444.1 | replication protein P | - |
| KIM41_RS20105 (KIM41_19840) | - | 3794340..3795350 (-) | 1011 | WP_000729535.1 | DUF1376 domain-containing protein | - |
| KIM41_RS20110 (KIM41_19845) | - | 3795437..3795874 (-) | 438 | WP_000693932.1 | toxin YdaT family protein | - |
| KIM41_RS20115 (KIM41_19850) | - | 3795871..3796131 (-) | 261 | WP_001172789.1 | transcriptional regulator | - |
| KIM41_RS20120 (KIM41_19855) | - | 3796258..3796650 (+) | 393 | WP_000578360.1 | helix-turn-helix domain-containing protein | - |
| KIM41_RS20125 (KIM41_19860) | - | 3796697..3797056 (-) | 360 | WP_001022415.1 | helix-turn-helix domain-containing protein | - |
| KIM41_RS20130 (KIM41_19865) | - | 3797059..3797361 (-) | 303 | WP_000692026.1 | type II toxin-antitoxin system HigB family toxin | - |
| KIM41_RS20135 | - | 3797775..3797975 (-) | 201 | WP_024182289.1 | ECs_2282 family putative zinc-binding protein | - |
| KIM41_RS20140 (KIM41_19875) | ydfC | 3798068..3798286 (+) | 219 | WP_001171921.1 | protein YdfC | - |
| KIM41_RS20145 (KIM41_19880) | - | 3798290..3798454 (-) | 165 | WP_001331716.1 | hypothetical protein | - |
| KIM41_RS20150 (KIM41_19885) | dicB | 3798855..3799043 (+) | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| KIM41_RS20155 (KIM41_19890) | - | 3799040..3799228 (+) | 189 | WP_000199475.1 | DUF1482 family protein | - |
| KIM41_RS20160 (KIM41_19895) | - | 3799323..3801773 (+) | 2451 | WP_000048499.1 | exonuclease | - |
| KIM41_RS20165 (KIM41_19900) | - | 3801841..3802083 (+) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| KIM41_RS20170 (KIM41_19905) | - | 3802061..3803080 (+) | 1020 | WP_001299351.1 | tyrosine-type recombinase/integrase | - |
| KIM41_RS20175 (KIM41_19910) | yccA | 3803488..3804147 (+) | 660 | WP_000375138.1 | FtsH protease modulator YccA | - |
| KIM41_RS20180 (KIM41_19915) | tusE | 3804238..3804567 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| KIM41_RS20185 (KIM41_19920) | yccX | 3804564..3804842 (-) | 279 | WP_000048244.1 | acylphosphatase | - |
| KIM41_RS20190 (KIM41_19925) | rlmI | 3804937..3806127 (+) | 1191 | WP_000116301.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| KIM41_RS20195 (KIM41_19930) | hspQ | 3806185..3806502 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| KIM41_RS20200 (KIM41_19935) | yccU | 3806547..3806960 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| KIM41_RS20205 (KIM41_19940) | csgI | 3807133..3807795 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| KIM41_RS20210 (KIM41_19945) | mgsA | 3807891..3808349 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| KIM41_RS20215 (KIM41_19950) | helD | 3808381..3810435 (-) | 2055 | WP_001297106.1 | DNA helicase IV | - |
| KIM41_RS20220 (KIM41_19955) | yccF | 3810558..3811004 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| KIM41_RS20225 (KIM41_19960) | yccS | 3811014..3813176 (+) | 2163 | WP_000875023.1 | YccS family putative transporter | - |
| KIM41_RS20230 (KIM41_19965) | sxy/tfoX | 3813139..3813768 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| KIM41_RS20235 (KIM41_19970) | sulA | 3813987..3814496 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| KIM41_RS20240 (KIM41_19975) | ompA | 3814853..3815893 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| KIM41_RS20245 (KIM41_19980) | matP | 3815968..3816420 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| KIM41_RS20250 (KIM41_19985) | ycbZ | 3816606..3818366 (+) | 1761 | WP_000156528.1 | AAA family ATPase | - |
| KIM41_RS20255 (KIM41_19990) | fabA | 3818435..3818953 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| KIM41_RS20260 (KIM41_19995) | rmf | 3819023..3819190 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| KIM41_RS20265 (KIM41_20000) | pqiC | 3819446..3820009 (-) | 564 | WP_000759122.1 | membrane integrity-associated transporter subunit PqiC | - |
| KIM41_RS20270 (KIM41_20005) | pqiB | 3820006..3821646 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| KIM41_RS20275 (KIM41_20010) | pqiA | 3821651..3822904 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| KIM41_RS20280 (KIM41_20015) | uup | 3823034..3824941 (-) | 1908 | WP_000053122.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=566129 KIM41_RS20230 WP_000839153.1 3813139..3813768(-) (sxy/tfoX) [Escherichia coli strain 96_1414B]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=566129 KIM41_RS20230 WP_000839153.1 3813139..3813768(-) (sxy/tfoX) [Escherichia coli strain 96_1414B]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |