Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | KIM42_RS20230 | Genome accession | NZ_CP074777 |
| Coordinates | 3813140..3813769 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain 96_1414P | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3787945..3826272 | 3813140..3813769 | within | 0 |
Gene organization within MGE regions
Location: 3787945..3826272
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIM42_RS20020 (KIM42_19750) | - | 3788166..3788438 (-) | 273 | WP_001342259.1 | hypothetical protein | - |
| KIM42_RS20025 | - | 3788407..3788538 (-) | 132 | WP_001342258.1 | hypothetical protein | - |
| KIM42_RS20030 (KIM42_19755) | - | 3788574..3788831 (+) | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| KIM42_RS20035 (KIM42_19760) | - | 3788837..3789136 (+) | 300 | WP_000220601.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KIM42_RS20040 (KIM42_19765) | - | 3789341..3789685 (-) | 345 | WP_000206830.1 | hypothetical protein | - |
| KIM42_RS20045 (KIM42_19770) | - | 3789682..3790047 (-) | 366 | WP_001229296.1 | HNH endonuclease | - |
| KIM42_RS20050 (KIM42_19775) | - | 3790049..3790267 (-) | 219 | WP_000209152.1 | DUF4014 family protein | - |
| KIM42_RS20055 (KIM42_19780) | - | 3790478..3790990 (-) | 513 | Protein_3936 | ead/Ea22-like family protein | - |
| KIM42_RS20060 (KIM42_19785) | - | 3790987..3791163 (-) | 177 | WP_000753069.1 | hypothetical protein | - |
| KIM42_RS20065 (KIM42_19790) | - | 3791156..3791338 (-) | 183 | WP_001224662.1 | DUF7167 family protein | - |
| KIM42_RS20070 (KIM42_19795) | - | 3791372..3791584 (-) | 213 | WP_000935422.1 | hypothetical protein | - |
| KIM42_RS20075 (KIM42_19800) | - | 3791635..3791991 (-) | 357 | WP_000403783.1 | hypothetical protein | - |
| KIM42_RS20080 (KIM42_19805) | - | 3791969..3792430 (-) | 462 | WP_001209480.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| KIM42_RS20085 (KIM42_19810) | - | 3792427..3792723 (-) | 297 | WP_001266133.1 | DUF4406 domain-containing protein | - |
| KIM42_RS20090 (KIM42_19815) | - | 3792720..3793112 (-) | 393 | WP_001040234.1 | DUF977 family protein | - |
| KIM42_RS20095 (KIM42_19820) | - | 3793128..3793853 (-) | 726 | WP_000450641.1 | DUF1627 domain-containing protein | - |
| KIM42_RS20100 (KIM42_19825) | - | 3793887..3794348 (-) | 462 | WP_000139444.1 | replication protein P | - |
| KIM42_RS20105 (KIM42_19830) | - | 3794341..3795351 (-) | 1011 | WP_000729535.1 | DUF1376 domain-containing protein | - |
| KIM42_RS20110 (KIM42_19835) | - | 3795438..3795875 (-) | 438 | WP_000693932.1 | toxin YdaT family protein | - |
| KIM42_RS20115 (KIM42_19840) | - | 3795872..3796132 (-) | 261 | WP_001172789.1 | transcriptional regulator | - |
| KIM42_RS20120 (KIM42_19845) | - | 3796259..3796651 (+) | 393 | WP_000578360.1 | helix-turn-helix domain-containing protein | - |
| KIM42_RS20125 (KIM42_19850) | - | 3796698..3797057 (-) | 360 | WP_001022415.1 | helix-turn-helix domain-containing protein | - |
| KIM42_RS20130 (KIM42_19855) | - | 3797060..3797362 (-) | 303 | WP_000692026.1 | type II toxin-antitoxin system HigB family toxin | - |
| KIM42_RS20135 | - | 3797776..3797976 (-) | 201 | WP_024182289.1 | ECs_2282 family putative zinc-binding protein | - |
| KIM42_RS20140 (KIM42_19865) | ydfC | 3798069..3798287 (+) | 219 | WP_001171921.1 | protein YdfC | - |
| KIM42_RS20145 (KIM42_19870) | - | 3798291..3798455 (-) | 165 | WP_001331716.1 | hypothetical protein | - |
| KIM42_RS20150 (KIM42_19875) | dicB | 3798856..3799044 (+) | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| KIM42_RS20155 (KIM42_19880) | - | 3799041..3799229 (+) | 189 | WP_000199475.1 | DUF1482 family protein | - |
| KIM42_RS20160 (KIM42_19885) | - | 3799324..3801774 (+) | 2451 | WP_000048499.1 | exonuclease | - |
| KIM42_RS20165 (KIM42_19890) | - | 3801842..3802084 (+) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| KIM42_RS20170 (KIM42_19895) | - | 3802062..3803081 (+) | 1020 | WP_001299351.1 | tyrosine-type recombinase/integrase | - |
| KIM42_RS20175 (KIM42_19900) | yccA | 3803489..3804148 (+) | 660 | WP_000375138.1 | FtsH protease modulator YccA | - |
| KIM42_RS20180 (KIM42_19905) | tusE | 3804239..3804568 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| KIM42_RS20185 (KIM42_19910) | yccX | 3804565..3804843 (-) | 279 | WP_000048244.1 | acylphosphatase | - |
| KIM42_RS20190 (KIM42_19915) | rlmI | 3804938..3806128 (+) | 1191 | WP_000116301.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| KIM42_RS20195 (KIM42_19920) | hspQ | 3806186..3806503 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| KIM42_RS20200 (KIM42_19925) | yccU | 3806548..3806961 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| KIM42_RS20205 (KIM42_19930) | csgI | 3807134..3807796 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| KIM42_RS20210 (KIM42_19935) | mgsA | 3807892..3808350 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| KIM42_RS20215 (KIM42_19940) | helD | 3808382..3810436 (-) | 2055 | WP_001297106.1 | DNA helicase IV | - |
| KIM42_RS20220 (KIM42_19945) | yccF | 3810559..3811005 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| KIM42_RS20225 (KIM42_19950) | yccS | 3811015..3813177 (+) | 2163 | WP_000875023.1 | YccS family putative transporter | - |
| KIM42_RS20230 (KIM42_19955) | sxy/tfoX | 3813140..3813769 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| KIM42_RS20235 (KIM42_19960) | sulA | 3813988..3814497 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| KIM42_RS20240 (KIM42_19965) | ompA | 3814854..3815894 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| KIM42_RS20245 (KIM42_19970) | matP | 3815969..3816421 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| KIM42_RS20250 (KIM42_19975) | ycbZ | 3816607..3818367 (+) | 1761 | WP_000156528.1 | AAA family ATPase | - |
| KIM42_RS20255 (KIM42_19980) | fabA | 3818436..3818954 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| KIM42_RS20260 (KIM42_19985) | rmf | 3819024..3819191 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| KIM42_RS20265 (KIM42_19990) | pqiC | 3819447..3820010 (-) | 564 | WP_000759122.1 | membrane integrity-associated transporter subunit PqiC | - |
| KIM42_RS20270 (KIM42_19995) | pqiB | 3820007..3821647 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| KIM42_RS20275 (KIM42_20000) | pqiA | 3821652..3822905 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| KIM42_RS20280 (KIM42_20005) | uup | 3823035..3824942 (-) | 1908 | WP_000053122.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=566107 KIM42_RS20230 WP_000839153.1 3813140..3813769(-) (sxy/tfoX) [Escherichia coli strain 96_1414P]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=566107 KIM42_RS20230 WP_000839153.1 3813140..3813769(-) (sxy/tfoX) [Escherichia coli strain 96_1414P]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |