Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   MKI55_RS04470 Genome accession   NZ_CP092542
Coordinates   925905..926891 (+) Length   328 a.a.
NCBI ID   WP_001067050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain VRMSSA-WC113     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 920905..931891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKI55_RS04455 (MKI55_000882) - 921312..922253 (+) 942 WP_000786734.1 ATP-binding cassette domain-containing protein -
  MKI55_RS04460 (MKI55_000883) - 922272..923927 (+) 1656 WP_000197018.1 peptide ABC transporter substrate-binding protein -
  MKI55_RS04465 (MKI55_000884) opp4A 924139..925854 (+) 1716 WP_000517183.1 oligopeptide ABC transporter substrate-binding protein -
  MKI55_RS04470 (MKI55_000885) amiE 925905..926891 (+) 987 WP_001067050.1 ABC transporter ATP-binding protein Regulator
  MKI55_RS04475 (MKI55_000886) - 926894..927874 (+) 981 WP_000427767.1 dipeptide ABC transporter ATP-binding protein -
  MKI55_RS04480 (MKI55_000887) opp4B 927867..928829 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  MKI55_RS04485 (MKI55_000888) opp4C 928841..929722 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  MKI55_RS04490 (MKI55_000889) trpS 929764..930753 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  MKI55_RS04495 (MKI55_000890) spxA 931047..931442 (+) 396 WP_000258003.1 transcriptional regulator SpxA -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 36945.40 Da        Isoelectric Point: 8.4775

>NTDB_id=566044 MKI55_RS04470 WP_001067050.1 925905..926891(+) (amiE) [Staphylococcus aureus strain VRMSSA-WC113]
MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSSGEVIFDGKRIDT
LNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGG
MRQRVMIAMAISCSPKLLIADEPTRALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG
IKEILHNPKHPYTQKLLSTIPKLKEGQKRLETIEGIVPSIQAFHVNKCRFANRCNKKLDICNNQSPKMHVCEDVIVRCHL
YKNEYKEI

Nucleotide


Download         Length: 987 bp        

>NTDB_id=566044 MKI55_RS04470 WP_001067050.1 925905..926891(+) (amiE) [Staphylococcus aureus strain VRMSSA-WC113]
ATGAATAATGTATTGTTAGAGGTTAAAGATTTAGAAACATCATTAAAAATAAATAATGAATGGTTAGCAACTGTTGAAAA
TATTTCTTTTGAATTATCTAAAGGAGAAGTTTTGGGTATAGTAGGGGAATCTGGTTGCGGTAAGTCCATATTAAGTAAGT
CAATTATTAAATTATTACCAGAAAAGATATCTAAACTAAGTAGTGGAGAAGTTATATTTGATGGTAAACGAATCGATACG
CTCAATGAGAAGCAATTGCTAGATATTCGAGGAAATGATATTGCTATGATTTTTCAAGAACCTATGACTGCTTTAAATCC
TGTATTTACCATAAAAAATCAACTTGTGGAATCTATAAAATCACATAAAAAAATTTCTAAAAAAGAAGCAAATAACTTAG
CAAAAGATTTACTAAAAAAAGTTGGAATTGCTAGACAAGATGAAATATTAAATAGCTATCCTCATCAATTATCTGGTGGT
ATGAGACAAAGAGTAATGATTGCAATGGCCATTTCATGTTCTCCTAAATTATTAATTGCTGATGAACCTACAAGAGCATT
GGATGTCACGATTCAAGCGCAAATATTAGACTTATTAAAAGAATTGCAAAAGGAAACGCAAATGGCAATTATGATGATTA
CACATGATTTGAGTGTAGTTGCTGAGTTTTGCGATAAAGTCTTAGTTATGTATGCAGGTCAAATTGTAGAATTTGGAGGC
ATAAAAGAAATACTACACAATCCGAAACATCCTTATACCCAAAAATTATTATCAACAATTCCAAAACTTAAAGAAGGGCA
GAAACGACTTGAAACGATAGAAGGAATTGTGCCATCAATCCAAGCATTTCACGTTAATAAGTGCAGATTTGCAAATAGAT
GTAACAAAAAACTGGATATTTGTAATAATCAATCTCCTAAAATGCATGTTTGTGAAGACGTCATTGTACGTTGTCATTTG
TACAAAAATGAATATAAGGAGATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

44.231

95.122

0.421

  amiE Streptococcus thermophilus LMD-9

44.231

95.122

0.421

  amiE Streptococcus salivarius strain HSISS4

44.231

95.122

0.421

  oppD Streptococcus mutans UA159

44.66

94.207

0.421