Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JRY14_RS14890 Genome accession   NZ_CP074714
Coordinates   2635913..2636191 (+) Length   92 a.a.
NCBI ID   WP_086385263.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain B13     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2635913..2644602 2635913..2636191 within 0


Gene organization within MGE regions


Location: 2635913..2644602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY14_RS14890 (JRY14_14850) abrB 2635913..2636191 (+) 279 WP_086385263.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JRY14_RS14895 (JRY14_14855) - 2636184..2636543 (+) 360 WP_016122507.1 hypothetical protein -
  JRY14_RS14900 (JRY14_14860) - 2636562..2636729 (+) 168 WP_006923988.1 DUF3954 domain-containing protein -
  JRY14_RS14905 (JRY14_14865) - 2636755..2637006 (+) 252 WP_006923989.1 hypothetical protein -
  JRY14_RS14910 (JRY14_14870) - 2637026..2637535 (+) 510 WP_086412443.1 dUTP diphosphatase -
  JRY14_RS14915 (JRY14_14875) - 2638803..2639189 (-) 387 WP_006923995.1 hypothetical protein -
  JRY14_RS14920 (JRY14_14880) - 2639697..2640161 (-) 465 WP_016122509.1 hypothetical protein -
  JRY14_RS31280 - 2641627..2641883 (+) 257 Protein_2615 hypothetical protein -
  JRY14_RS14925 (JRY14_14885) - 2642197..2642679 (+) 483 WP_086412442.1 ArpU family phage packaging/lysis transcriptional regulator -
  JRY14_RS14930 (JRY14_14890) - 2642679..2643221 (+) 543 WP_006924002.1 site-specific integrase -
  JRY14_RS14935 (JRY14_14895) - 2643748..2644602 (+) 855 WP_086412441.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10143.73 Da        Isoelectric Point: 5.1487

>NTDB_id=565978 JRY14_RS14890 WP_086385263.1 2635913..2636191(+) (abrB) [Bacillus thuringiensis strain B13]
MKNTGVARKVDELGRVVIPVELRRTLGIVEGTTIDFHVEGENIVLRKYENSCFVTGEVSETNIELLGGRMFLSKEGAIEL
LDLIQKSGMAHA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=565978 JRY14_RS14890 WP_086385263.1 2635913..2636191(+) (abrB) [Bacillus thuringiensis strain B13]
ATGAAAAACACAGGCGTTGCAAGAAAAGTGGACGAGCTAGGTCGTGTAGTAATTCCAGTAGAGTTACGCAGAACTTTAGG
GATTGTCGAAGGAACGACAATAGATTTTCATGTCGAGGGTGAAAACATTGTTCTAAGAAAATATGAAAACTCATGCTTTG
TGACGGGTGAAGTTTCTGAAACCAACATAGAGTTGCTAGGTGGCCGAATGTTTTTAAGCAAGGAAGGGGCAATTGAATTA
CTGGATCTTATTCAGAAGAGTGGGATGGCACATGCCTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(52-86)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.471

94.565

0.543