Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JRY14_RS12715 Genome accession   NZ_CP074714
Coordinates   2206080..2206367 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain B13     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2201080..2211367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY14_RS12700 (JRY14_12665) - 2202483..2202944 (+) 462 WP_016122345.1 NUDIX hydrolase -
  JRY14_RS12705 (JRY14_12670) nadE 2202994..2203812 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  JRY14_RS12710 (JRY14_12675) - 2204083..2205963 (+) 1881 WP_001025988.1 ABC transporter permease -
  JRY14_RS12715 (JRY14_12680) abrB 2206080..2206367 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JRY14_RS12720 (JRY14_12685) - 2206643..2207590 (+) 948 WP_000099746.1 serine protease -
  JRY14_RS12725 (JRY14_12690) - 2207632..2207940 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  JRY14_RS12730 (JRY14_12695) - 2208047..2208982 (+) 936 WP_016122346.1 aldo/keto reductase -
  JRY14_RS12735 (JRY14_12700) - 2209030..2210205 (+) 1176 WP_001082492.1 MFS transporter -
  JRY14_RS12740 (JRY14_12705) - 2210500..2210724 (-) 225 WP_000162602.1 hypothetical protein -
  JRY14_RS12745 (JRY14_12710) - 2210809..2211156 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=565976 JRY14_RS12715 WP_000648324.1 2206080..2206367(+) (abrB) [Bacillus thuringiensis strain B13]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=565976 JRY14_RS12715 WP_000648324.1 2206080..2206367(+) (abrB) [Bacillus thuringiensis strain B13]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526