Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   KIP77_RS01350 Genome accession   NZ_CP074710
Coordinates   62277..63431 (+) Length   384 a.a.
NCBI ID   WP_000755282.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57277..68431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP77_RS01325 (KIP77_01325) - 57467..58681 (+) 1215 WP_001177950.1 oxygenase MpaB family protein -
  KIP77_RS01330 (KIP77_01330) - 58751..58957 (-) 207 WP_000182543.1 hypothetical protein -
  KIP77_RS01335 (KIP77_01335) - 59011..61086 (-) 2076 WP_001120672.1 TonB-dependent copper receptor -
  KIP77_RS01340 (KIP77_01340) - 61159..61587 (-) 429 WP_000231981.1 DUF2946 family protein -
  KIP77_RS01345 (KIP77_01345) def 61624..62154 (-) 531 WP_001196539.1 peptide deformylase -
  KIP77_RS01350 (KIP77_01350) tsaP 62277..63431 (+) 1155 WP_000755282.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KIP77_RS01355 (KIP77_01355) dprA 63452..64582 (+) 1131 WP_049594893.1 DNA-processing protein DprA Machinery gene
  KIP77_RS01360 (KIP77_01360) - 64633..65202 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  KIP77_RS01365 (KIP77_01365) - 65594..66514 (-) 921 WP_000084546.1 DMT family transporter -
  KIP77_RS01370 (KIP77_01370) - 66620..67270 (-) 651 WP_098729712.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42336.25 Da        Isoelectric Point: 8.5816

>NTDB_id=565909 KIP77_RS01350 WP_000755282.1 62277..63431(+) (tsaP) [Acinetobacter baumannii strain ATCC 17978]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=565909 KIP77_RS01350 WP_000755282.1 62277..63431(+) (tsaP) [Acinetobacter baumannii strain ATCC 17978]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAGCGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGGGACGGCTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAATACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGTTACTACAAGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGGGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992