Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KH969_RS05985 Genome accession   NZ_CP074701
Coordinates   1199416..1200045 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 702/18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194416..1205045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH969_RS05970 (KH969_05975) helD 1194658..1196712 (-) 2055 WP_012311774.1 DNA helicase IV -
  KH969_RS05975 (KH969_05980) yccF 1196835..1197281 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KH969_RS05980 (KH969_05985) yccS 1197291..1199453 (+) 2163 WP_000875033.1 YccS family putative transporter -
  KH969_RS05985 (KH969_05990) sxy/tfoX 1199416..1200045 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KH969_RS05990 (KH969_05995) sulA 1200264..1200773 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KH969_RS05995 (KH969_06000) ompA 1201129..1202181 (+) 1053 WP_024175778.1 porin OmpA -
  KH969_RS06000 (KH969_06005) - 1202228..1203574 (-) 1347 WP_000483766.1 IS4-like element IS4 family transposase -
  KH969_RS06005 (KH969_06010) matP 1203695..1204147 (-) 453 WP_000877166.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=565889 KH969_RS05985 WP_000839153.1 1199416..1200045(-) (sxy/tfoX) [Escherichia coli strain 702/18]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=565889 KH969_RS05985 WP_000839153.1 1199416..1200045(-) (sxy/tfoX) [Escherichia coli strain 702/18]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1