Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IS509_RS17475 Genome accession   NZ_CP074698
Coordinates   3616511..3617038 (-) Length   175 a.a.
NCBI ID   WP_000695061.1    Uniprot ID   A0A506J6X2
Organism   Acinetobacter baumannii strain X4-136     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3611511..3622038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS509_RS17455 - 3611696..3612571 (-) 876 WP_000218802.1 hypothetical protein -
  IS509_RS17460 aroB 3612587..3613669 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  IS509_RS17465 aroK 3613698..3614267 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IS509_RS17470 pilQ 3614279..3616444 (-) 2166 WP_001017028.1 type IV pilus secretin PilQ Machinery gene
  IS509_RS17475 pilP 3616511..3617038 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  IS509_RS17480 pilO 3617049..3617789 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IS509_RS17485 pilN 3617786..3618427 (-) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  IS509_RS17490 pilM 3618427..3619485 (-) 1059 WP_032043164.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19445.72 Da        Isoelectric Point: 8.9898

>NTDB_id=565881 IS509_RS17475 WP_000695061.1 3616511..3617038(-) (pilP) [Acinetobacter baumannii strain X4-136]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRIIHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=565881 IS509_RS17475 WP_000695061.1 3616511..3617038(-) (pilP) [Acinetobacter baumannii strain X4-136]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTATCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A506J6X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714