Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IS509_RS04560 Genome accession   NZ_CP074698
Coordinates   954282..954608 (+) Length   108 a.a.
NCBI ID   WP_114889875.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain X4-136     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 955399..956564 954282..954608 flank 791


Gene organization within MGE regions


Location: 954282..956564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS509_RS04560 ssb 954282..954608 (+) 327 WP_114889875.1 single-stranded DNA-binding protein Machinery gene
  IS509_RS04565 - 954687..955382 (-) 696 WP_279446719.1 hypothetical protein -
  IS509_RS04570 - 955399..956564 (+) 1166 WP_085940844.1 IS3-like element ISAba22 family transposase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12182.90 Da        Isoelectric Point: 10.3517

>NTDB_id=565858 IS509_RS04560 WP_114889875.1 954282..954608(+) (ssb) [Acinetobacter baumannii strain X4-136]
MPNVKKVTVMGVLGLNPETKQFSNGGSITTFSVATTEFWKDKTTGERKEATEWHRITTSNRLAEIASKYLKKGGKVYSEG
SLRTRKWKDSKGAEKEITEIRADEMQLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=565858 IS509_RS04560 WP_114889875.1 954282..954608(+) (ssb) [Acinetobacter baumannii strain X4-136]
ATGCCAAACGTAAAGAAAGTTACTGTCATGGGTGTGTTAGGTCTTAACCCTGAAACTAAACAATTTTCCAACGGTGGCAG
CATTACGACATTCAGCGTTGCAACTACTGAGTTTTGGAAAGACAAGACCACAGGTGAACGTAAAGAAGCTACAGAGTGGC
ATAGAATCACCACCAGCAACCGTTTAGCCGAGATTGCCAGTAAGTACCTCAAGAAAGGCGGAAAGGTGTATAGCGAAGGC
TCATTGCGTACAAGGAAGTGGAAGGACAGCAAAGGGGCGGAAAAGGAAATAACCGAGATTCGAGCAGATGAGATGCAATT
GCTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.852

100

0.519
  ssb Neisseria gonorrhoeae MS11

47.17

98.148

0.463
  ssb Neisseria meningitidis MC58

47.17

98.148

0.463
  ssb Vibrio cholerae strain A1552

49.485

89.815

0.444