Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   IS508_RS18415 Genome accession   NZ_CP074695
Coordinates   3831766..3832248 (+) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain X4-107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3826766..3837248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS18405 pilX 3827069..3827887 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IS508_RS18410 pilY1 3827899..3831753 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  IS508_RS18415 pilY2 3831766..3832248 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  IS508_RS18420 pilE 3832245..3832670 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  IS508_RS18425 rpsP 3832817..3833068 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  IS508_RS18430 rimM 3833088..3833636 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  IS508_RS18435 trmD 3833682..3834422 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IS508_RS18440 rplS 3834631..3834999 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  IS508_RS18445 - 3835052..3835993 (-) 942 WP_085916958.1 triacylglycerol lipase -
  IS508_RS18450 - 3836108..3837142 (-) 1035 WP_279472743.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=565832 IS508_RS18415 WP_001046420.1 3831766..3832248(+) (pilY2) [Acinetobacter baumannii strain X4-107]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=565832 IS508_RS18415 WP_001046420.1 3831766..3832248(+) (pilY2) [Acinetobacter baumannii strain X4-107]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431