Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IS508_RS15140 Genome accession   NZ_CP074695
Coordinates   3148287..3148613 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain X4-107     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3143287..3153613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS508_RS15120 - 3143387..3144016 (-) 630 WP_000219967.1 FHA domain-containing protein -
  IS508_RS15125 gspD 3144057..3146333 (-) 2277 WP_001196428.1 type II secretion system secretin GspD -
  IS508_RS15130 - 3146375..3147211 (-) 837 WP_000870031.1 type II secretion system protein N -
  IS508_RS15135 gspN 3147211..3147954 (-) 744 WP_000730343.1 type II secretion system protein N -
  IS508_RS15140 hns 3148287..3148613 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  IS508_RS15145 - 3148808..3149248 (-) 441 WP_000661569.1 thioesterase family protein -
  IS508_RS15150 - 3149256..3150449 (-) 1194 WP_000681780.1 membrane protein -
  IS508_RS15155 - 3150459..3151298 (-) 840 WP_029424458.1 hypothetical protein -
  IS508_RS15160 - 3151307..3152074 (-) 768 WP_257260104.1 uroporphyrinogen-III synthase -
  IS508_RS15165 hemC 3152079..3152996 (-) 918 WP_031947272.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=565811 IS508_RS15140 WP_000801427.1 3148287..3148613(-) (hns) [Acinetobacter baumannii strain X4-107]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=565811 IS508_RS15140 WP_000801427.1 3148287..3148613(-) (hns) [Acinetobacter baumannii strain X4-107]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1