Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MKD44_RS08995 Genome accession   NZ_CP092534
Coordinates   1902267..1903694 (-) Length   475 a.a.
NCBI ID   WP_001538915.1    Uniprot ID   -
Organism   Escherichia coli strain DS566     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1897267..1908694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD44_RS08960 (MKD44_08955) hisL 1897851..1897901 (-) 51 WP_001364200.1 his operon leader peptide -
  MKD44_RS08965 (MKD44_08960) yefM 1898184..1898435 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  MKD44_RS08970 (MKD44_08965) yoeB 1898432..1898686 (+) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  MKD44_RS08975 (MKD44_08970) yeeZ 1898769..1899593 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  MKD44_RS08980 (MKD44_08975) yeeY 1899639..1900568 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  MKD44_RS08985 (MKD44_08980) yoeI 1900783..1900845 (+) 63 WP_010723108.1 membrane protein YoeI -
  MKD44_RS08990 (MKD44_08985) plaP 1900835..1902193 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  MKD44_RS08995 (MKD44_08990) sbcB 1902267..1903694 (-) 1428 WP_001538915.1 exodeoxyribonuclease I Machinery gene
  MKD44_RS09000 (MKD44_08995) dacD 1903903..1905069 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MKD44_RS09005 (MKD44_09000) sbmC 1905188..1905661 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  MKD44_RS09010 (MKD44_09005) yeeA 1905859..1906917 (+) 1059 WP_001200890.1 FUSC family protein -
  MKD44_RS09015 (MKD44_09010) tmaR 1907088..1907417 (+) 330 WP_000450409.1 DUF496 family protein -
  MKD44_RS09020 (MKD44_09015) - 1907517..1907960 (-) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  MKD44_RS09025 (MKD44_09020) pduU 1907965..1908315 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54483.79 Da        Isoelectric Point: 5.4720

>NTDB_id=565790 MKD44_RS08995 WP_001538915.1 1902267..1903694(-) (sbcB) [Escherichia coli strain DS566]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=565790 MKD44_RS08995 WP_001538915.1 1902267..1903694(-) (sbcB) [Escherichia coli strain DS566]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581