Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KH263_RS13010 Genome accession   NZ_CP074685
Coordinates   2710322..2711074 (-) Length   250 a.a.
NCBI ID   WP_003152643.1    Uniprot ID   A0A6A8LH02
Organism   Bacillus velezensis strain VTX9     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2705322..2716074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH263_RS12985 (KH263_12985) mreC 2705757..2706620 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  KH263_RS12990 (KH263_12990) mreB 2706651..2707664 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KH263_RS12995 (KH263_12995) radC 2707756..2708451 (-) 696 WP_003152646.1 DNA repair protein RadC -
  KH263_RS13000 (KH263_13000) - 2708483..2709052 (-) 570 WP_014305513.1 Maf family protein -
  KH263_RS13005 (KH263_13005) - 2709194..2710195 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  KH263_RS13010 (KH263_13010) comC 2710322..2711074 (-) 753 WP_003152643.1 A24 family peptidase Machinery gene
  KH263_RS13015 (KH263_13015) - 2711215..2712507 (-) 1293 WP_069013528.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KH263_RS20030 valS 2712566..2714251 (-) 1686 WP_249719476.1 valine--tRNA ligase -
  KH263_RS20035 - 2714160..2715209 (-) 1050 WP_249719447.1 class I tRNA ligase family protein -
  KH263_RS13025 (KH263_13025) - 2715663..2715854 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27152.80 Da        Isoelectric Point: 9.2521

>NTDB_id=565743 KH263_RS13010 WP_003152643.1 2710322..2711074(-) (comC) [Bacillus velezensis strain VTX9]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=565743 KH263_RS13010 WP_003152643.1 2710322..2711074(-) (comC) [Bacillus velezensis strain VTX9]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LH02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588