Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MKD47_RS19120 Genome accession   NZ_CP092533
Coordinates   3927979..3928419 (+) Length   146 a.a.
NCBI ID   WP_000360914.1    Uniprot ID   A0A0H2YVZ3
Organism   Escherichia coli strain DS566-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3922979..3933419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD47_RS19100 (MKD47_19095) aroP 3923979..3925349 (+) 1371 WP_001540704.1 aromatic amino acid transporter AroP -
  MKD47_RS19105 (MKD47_19100) ampE 3925392..3926246 (-) 855 WP_000172010.1 beta-lactamase regulator AmpE -
  MKD47_RS19110 (MKD47_19105) ampD 3926243..3926794 (-) 552 WP_000923703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MKD47_RS19115 (MKD47_19110) nadC 3926882..3927775 (+) 894 WP_001135168.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MKD47_RS19120 (MKD47_19115) pilA 3927979..3928419 (+) 441 WP_000360914.1 prepilin peptidase-dependent pilin Machinery gene
  MKD47_RS19125 (MKD47_19120) pilB 3928429..3929814 (+) 1386 WP_001025178.1 type II secretion system protein GspE Machinery gene
  MKD47_RS19130 (MKD47_19125) hofC 3929804..3931006 (+) 1203 WP_001540700.1 protein transport protein HofC -
  MKD47_RS19135 (MKD47_19130) guaC 3931041..3932084 (-) 1044 WP_001217338.1 GMP reductase -
  MKD47_RS19140 (MKD47_19135) - 3932240..3932284 (-) 45 WP_120795372.1 protein YacM -
  MKD47_RS19145 (MKD47_19140) coaE 3932309..3932929 (+) 621 WP_001269524.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15620.77 Da        Isoelectric Point: 4.5237

>NTDB_id=565726 MKD47_RS19120 WP_000360914.1 3927979..3928419(+) (pilA) [Escherichia coli strain DS566-1]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=565726 MKD47_RS19120 WP_000360914.1 3927979..3928419(+) (pilA) [Escherichia coli strain DS566-1]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGACTAAGCGTCGTCAT
GACGCCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2YVZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363