Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KH263_RS07125 Genome accession   NZ_CP074685
Coordinates   1407847..1408131 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402847..1413131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH263_RS07105 (KH263_07105) - 1404094..1405002 (+) 909 WP_213403943.1 ketopantoate reductase family protein -
  KH263_RS07110 (KH263_07110) - 1405032..1406264 (-) 1233 WP_003154560.1 aminopeptidase -
  KH263_RS07115 (KH263_07115) - 1406365..1406499 (-) 135 WP_003154559.1 protein YkpC -
  KH263_RS07120 (KH263_07120) mreBH 1406571..1407578 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  KH263_RS07125 (KH263_07125) abrB 1407847..1408131 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KH263_RS07130 (KH263_07130) - 1408304..1409608 (+) 1305 WP_057079986.1 ATP-binding protein -
  KH263_RS07135 (KH263_07135) - 1409610..1410437 (+) 828 WP_025851463.1 gamma-glutamylcyclotransferase family protein -
  KH263_RS07140 (KH263_07140) ktrC 1410478..1411143 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  KH263_RS07145 (KH263_07145) ade 1411292..1413025 (+) 1734 WP_003154552.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=565721 KH263_RS07125 WP_024085249.1 1407847..1408131(+) (abrB) [Bacillus velezensis strain VTX9]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=565721 KH263_RS07125 WP_024085249.1 1407847..1408131(+) (abrB) [Bacillus velezensis strain VTX9]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543