Detailed information NTG0565699

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: KH263_RS01965
• Genome accession: NZ_CP074685
• Coordinates: 418898..420046 (+)
• Length: 382 a.a.
• NCBI ID: WP_213403760.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain VTX9
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 413898..425046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KH263_RS01945 (KH263_01945)	-	414295..414978 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
KH263_RS01950 (KH263_01950)	-	414993..416429 (-)	1437	WP_088037501.1	ABC transporter permease	-
KH263_RS01955 (KH263_01955)	-	416642..417325 (+)	684	WP_208558017.1	response regulator transcription factor	-
KH263_RS01960 (KH263_01960)	-	417312..418745 (+)	1434	WP_161625271.1	HAMP domain-containing sensor histidine kinase	-
KH263_RS01965 (KH263_01965)	rapC	418898..420046 (+)	1149	WP_213403760.1	tetratricopeptide repeat protein	Regulator
KH263_RS01970 (KH263_01970)	phrC	420030..420149 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
KH263_RS01975 (KH263_01975)	-	420299..420394 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
KH263_RS01980 (KH263_01980)	-	420489..421853 (-)	1365	WP_014304341.1	aspartate kinase	-
KH263_RS01985 (KH263_01985)	ceuB	422268..423221 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
KH263_RS01990 (KH263_01990)	-	423211..424158 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
KH263_RS01995 (KH263_01995)	-	424152..424910 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45524.78 Da
• Isoelectric Point: 4.9237

>NTDB_id=565699 KH263_RS01965 WP_213403760.1 418898..420046(+) (rapC) [Bacillus velezensis strain VTX9]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKWGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=565699 KH263_RS01965 WP_213403760.1 418898..420046(+) (rapC) [Bacillus velezensis strain VTX9]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGTGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	81.937	100	0.819
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568