Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KH263_RS01785 Genome accession   NZ_CP074685
Coordinates   361043..361480 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 356043..366480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH263_RS19855 - 356622..356747 (-) 126 Protein_307 hypothetical protein -
  KH263_RS01750 (KH263_01750) - 356900..358102 (+) 1203 WP_025853783.1 GTP-binding protein -
  KH263_RS01755 (KH263_01755) - 358167..359303 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  KH263_RS01760 (KH263_01760) - 359318..359752 (+) 435 WP_057080003.1 RDD family protein -
  KH263_RS01765 (KH263_01765) - 359825..360145 (+) 321 WP_015388719.1 YckD family protein -
  KH263_RS01770 (KH263_01770) - 360249..360365 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  KH263_RS01775 (KH263_01775) - 360364..360582 (+) 219 Protein_313 family 1 glycosylhydrolase -
  KH263_RS01780 (KH263_01780) nin/comJ 360623..361021 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  KH263_RS01785 (KH263_01785) nucA/comI 361043..361480 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KH263_RS01790 (KH263_01790) hxlB 361839..362396 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  KH263_RS01795 (KH263_01795) hxlA 362393..363028 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  KH263_RS01800 (KH263_01800) - 363260..363622 (+) 363 WP_003156585.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=565698 KH263_RS01785 WP_003156588.1 361043..361480(-) (nucA/comI) [Bacillus velezensis strain VTX9]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=565698 KH263_RS01785 WP_003156588.1 361043..361480(-) (nucA/comI) [Bacillus velezensis strain VTX9]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641