Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM92_RS14090 Genome accession   NZ_CP074680
Coordinates   2901737..2902366 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MEI008     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2896737..2907366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM92_RS14075 (KIM92_14065) helD 2896979..2899033 (-) 2055 WP_001315388.1 DNA helicase IV -
  KIM92_RS14080 (KIM92_14070) yccF 2899156..2899602 (+) 447 WP_255864070.1 YccF domain-containing protein -
  KIM92_RS14085 (KIM92_14075) yccS 2899612..2901774 (+) 2163 WP_000875044.1 YccS family putative transporter -
  KIM92_RS14090 (KIM92_14080) sxy/tfoX 2901737..2902366 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM92_RS14095 (KIM92_14085) sulA 2902585..2903094 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM92_RS14100 (KIM92_14090) ompA 2903451..2904503 (+) 1053 WP_000750419.1 porin OmpA -
  KIM92_RS14105 (KIM92_14095) matP 2904578..2905030 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KIM92_RS14110 (KIM92_14100) ycbZ 2905216..2906976 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=565682 KIM92_RS14090 WP_000839153.1 2901737..2902366(-) (sxy/tfoX) [Escherichia coli strain MEI008]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=565682 KIM92_RS14090 WP_000839153.1 2901737..2902366(-) (sxy/tfoX) [Escherichia coli strain MEI008]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1