Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SITYG_RS08965 Genome accession   NZ_AP014880
Coordinates   1767702..1769678 (-) Length   658 a.a.
NCBI ID   WP_096363199.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1762702..1774678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS08940 (SITYG_17700) eeP 1763234..1764505 (-) 1272 WP_096363197.1 M50 family metallopeptidase Regulator
  SITYG_RS08945 (SITYG_17710) - 1764657..1765460 (-) 804 WP_003074045.1 phosphatidate cytidylyltransferase -
  SITYG_RS08950 (SITYG_17720) - 1765469..1766218 (-) 750 WP_096363198.1 isoprenyl transferase -
  SITYG_RS08955 (SITYG_17730) yajC 1766686..1767024 (-) 339 WP_003074039.1 preprotein translocase subunit YajC -
  SITYG_RS10695 (SITYG_17740) - 1767427..1767606 (-) 180 WP_231870232.1 hypothetical protein -
  SITYG_RS08965 (SITYG_17750) recP/tkt 1767702..1769678 (-) 1977 WP_096363199.1 transketolase Machinery gene
  SITYG_RS08970 (SITYG_17760) ulaG 1769819..1770910 (-) 1092 WP_003074034.1 L-ascorbate 6-phosphate lactonase -
  SITYG_RS08975 (SITYG_17770) - 1771072..1772742 (-) 1671 WP_096363200.1 BglG family transcription antiterminator -
  SITYG_RS08980 (SITYG_17780) - 1772946..1773653 (-) 708 WP_003074030.1 L-ribulose-5-phosphate 4-epimerase -
  SITYG_RS08985 (SITYG_17790) - 1773656..1774519 (-) 864 WP_096363201.1 L-ribulose-5-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71548.67 Da        Isoelectric Point: 4.8000

>NTDB_id=56562 SITYG_RS08965 WP_096363199.1 1767702..1769678(-) (recP/tkt) [Streptococcus intermedius strain TYG1620]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQMRINPEVPNWINRDRFVLSAGHGSMLLYALLHLSGFQD
VTMEELKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISMATGFAQAERFLAAKYNREEYNLFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLDKLIVLYDSNDINLDGETKDSFTESVRARYDAYGWHTDLVKDGTDLEAINAAIEAAKVSGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGAEEVTATRKALTWDYEPFEIPEEVYEDYRVNVAERGKAAYDAWVKLVEAYKQAYPD
LADEVAAVIAGQDPVEIKPEDFPVVETGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAIRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLNVLRPADARETQAAWYLALKSQTTPTALVLTRQNLTVEAGTDFDKVAKGAYVVYETANGFDTILLASGSEVNLAV
ATAKELEVQGEKVRVVSVPSTDIFDAQDAAYKEEILPNAVRRRVAIEMAATQSWYKYVGLDGSVIGIDKFGASAPAAKVM
KEYGFTVEHIVEVVKNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=56562 SITYG_RS08965 WP_096363199.1 1767702..1769678(-) (recP/tkt) [Streptococcus intermedius strain TYG1620]
ATGTCAAATTTATCTGTCAATGCCATTCGTTTTTTAGGAATTGATGCCATTGAAAAATCAAAATCTGGTCACCCAGGTGT
TGTCATGGGAGCAGCTCCGATGGCTTATGACTTGTTTACCAAGCAAATGCGCATCAATCCAGAAGTTCCAAATTGGATCA
ATCGCGATCGGTTTGTTTTATCAGCTGGTCATGGCTCTATGTTACTCTATGCCCTTCTCCATTTGTCTGGTTTTCAAGAT
GTTACAATGGAAGAACTCAAGAACTTCCGTCAATGGGGTTCTAAAACGCCTGGGCATCCCGAATTTGGACATACTGCTGG
TGTAGATGCGACAACTGGGCCACTTGGTCAAGGAATTTCTATGGCAACTGGTTTTGCACAAGCAGAACGTTTCCTAGCGG
CTAAGTATAATCGTGAAGAGTATAACCTCTTTGACCACTATACGTATGTAATCTGTGGTGATGGGGATTTGATGGAAGGT
GTATCTGCTGAAGCAGCTTCTTATGCTGGACTCCAAAAGCTAGACAAGCTCATCGTTCTCTATGACTCCAACGATATTAA
TCTGGATGGAGAAACCAAGGATTCCTTTACAGAAAGTGTTCGGGCGCGTTATGATGCTTATGGTTGGCACACAGATTTGG
TCAAAGATGGCACAGACTTAGAAGCGATCAATGCAGCGATTGAGGCTGCAAAAGTTTCTGGCAAACCGTCCTTAATTGAA
GTGAAAACAGTGATTGGTTATGGTTCACCAAACAAACAAGGGACTAATGCCGTTCATGGAGCTCCTCTTGGTGCAGAAGA
AGTAACCGCTACTCGTAAAGCTCTTACTTGGGATTACGAACCGTTTGAAATTCCTGAAGAAGTCTACGAAGATTATCGGG
TCAATGTTGCCGAACGTGGGAAAGCTGCTTATGATGCTTGGGTAAAACTTGTTGAAGCATACAAACAAGCCTATCCTGAC
TTAGCTGATGAAGTAGCTGCTGTTATTGCGGGACAAGATCCAGTTGAGATCAAGCCAGAAGATTTCCCAGTAGTAGAAAC
AGGTTTCTCACAAGCTACTCGTAATTCTAGCCAAGATGCTTTAAATGCGGCAGCAAAAGTACTTCCAACATTCCTTGGTG
GCTCTGCTGACCTAGCTCATTCTAATATGACTTATATCAAAGAAGATGGCTTGCAAGATGATGCCCACCGTCTTAACCGC
AACATTCAATTCGGTGTACGTGAATTTGCTATGGGAACGATTCTGAATGGTATGGCACTTCACGGGGGACTTCGTGTTTA
TGGTGGTACATTCTTTGTCTTCTCAGATTATGTCAAAGCGGCTATTCGTTTATCAGCTCTTCAAGGCTTGCCTGTAACCT
ATGTCTTTACACATGATTCAATTGCAGTTGGTGAGGATGGTCCAACTCATGAACCAATTGAGCACTTAGCAGGTCTTCGT
GCAATTCCAAACCTCAATGTCTTGCGCCCAGCAGATGCACGTGAAACACAGGCTGCTTGGTACTTGGCGCTGAAGAGTCA
AACAACTCCAACAGCTTTGGTTCTCACACGTCAAAACTTGACAGTTGAAGCTGGAACTGACTTTGACAAGGTGGCGAAAG
GAGCTTATGTTGTATATGAAACAGCAAATGGTTTTGATACAATTCTTCTGGCATCTGGTTCTGAAGTTAACTTAGCTGTT
GCAACTGCTAAAGAGTTGGAAGTACAAGGAGAAAAGGTTCGTGTTGTCAGCGTACCATCAACAGACATCTTTGATGCACA
AGACGCTGCTTACAAAGAAGAAATTTTACCAAATGCAGTTCGTCGCCGTGTTGCTATCGAAATGGCTGCAACCCAATCTT
GGTACAAATATGTTGGACTTGACGGTTCTGTTATCGGTATTGATAAATTCGGTGCTTCTGCTCCAGCAGCTAAAGTAATG
AAAGAGTATGGTTTCACAGTTGAACATATCGTTGAGGTTGTGAAAAACTTGAAATAG

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(543-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

79.452

99.848

0.793

Multiple sequence alignment