Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SITYG_RS08710 Genome accession   NZ_AP014880
Coordinates   1729873..1731144 (+) Length   423 a.a.
NCBI ID   WP_096363171.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1724873..1736144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS10490 (SITYG_17220) - 1726547..1727290 (-) 744 WP_096363166.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SITYG_RS10495 (SITYG_17230) prmA 1727291..1728244 (-) 954 WP_162287172.1 50S ribosomal protein L11 methyltransferase -
  SITYG_RS08695 (SITYG_17240) - 1728386..1728856 (-) 471 WP_096363168.1 GNAT family N-acetyltransferase -
  SITYG_RS08700 (SITYG_17250) - 1728853..1729305 (-) 453 WP_096363169.1 NUDIX hydrolase -
  SITYG_RS08705 (SITYG_17260) - 1729315..1729785 (-) 471 WP_096363170.1 DUF3013 family protein -
  SITYG_RS08710 (SITYG_17270) rarA 1729873..1731144 (+) 1272 WP_096363171.1 replication-associated recombination protein A Machinery gene
  SITYG_RS08720 - 1731845..1732157 (-) 313 Protein_1688 hypothetical protein -
  SITYG_RS08725 (SITYG_17290) - 1732312..1733079 (-) 768 WP_009569459.1 epoxyqueuosine reductase QueH -
  SITYG_RS08730 (SITYG_17310) groL 1733460..1735082 (-) 1623 WP_020999170.1 chaperonin GroEL -
  SITYG_RS08735 (SITYG_17320) groES 1735115..1735396 (-) 282 WP_096363172.1 co-chaperone GroES -
  SITYG_RS08740 (SITYG_17330) - 1735541..1735831 (-) 291 WP_096363173.1 PTS fructose transporter subunit IA -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46819.34 Da        Isoelectric Point: 5.8402

>NTDB_id=56559 SITYG_RS08710 WP_096363171.1 1729873..1731144(+) (rarA) [Streptococcus intermedius strain TYG1620]
MPENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNDDIRKAIQ
LALTDKERGFDFSVELDDEALEFIAISTNGDLRSAYNSLDLAVLSTPEDDKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQRIGFPEARILIANIV
IDLALSPKSNSAYTAMDKALADLRKNGNLPIPRHLRDGHYTGSKALGNALDYLYPHSYPGNWVKQDYLPDKIKDADYFTP
NENGKYERALGMTKDKIDHLKKD

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=56559 SITYG_RS08710 WP_096363171.1 1729873..1731144(+) (rarA) [Streptococcus intermedius strain TYG1620]
ATGCCAGAAAATCTCGCCTTGCGTATGAGGCCGACCGACATTGATCAGATCATCGGCCAGCAGCATCTGGTCGGACCTGG
AAAAATCATCCGTCGCATGGTTGAAGCCAACCGCCTATCCTCGATGATTCTCTACGGGCCACCGGGTATCGGCAAAACCT
CTATCGCCTCAGCTATCGCCGGCACGACCAAATATGCTTTTCGAACCTTTAATGCCACCGTAGATAGCAAGAAACGCCTG
CAAGAGATTGCTGAAGAAGCGAAATTTTCCGGCGGTCTAGTTCTCCTGCTAGACGAGATTCACCGCTTGGACAAGACCAA
GCAAGACTTTCTGCTACCGCTATTAGAAAGTGGTCTGGTCATCATGATTGGGGCGACGACAGAAAATCCATTTTTCTCGG
TGACACCCGCTATCCGAAGCCGAGTTCAGATATTTGAGCTGGAGCCCCTTAGCAACGACGATATTCGAAAAGCCATTCAG
CTAGCCTTGACGGATAAGGAGCGAGGATTTGATTTTTCAGTAGAGCTAGATGATGAGGCTCTGGAATTCATTGCCATCTC
TACCAACGGAGACCTGCGCTCCGCCTATAACTCGCTAGATTTAGCCGTACTCTCTACTCCAGAAGATGACAAGGGCATCC
GCCATATTACGCTTGATGTCATGGAAAACAGCCTGCAAAAGAGCTATATCACCATGGATAAGGACGGGGACGGCCATTAC
GATGTCCTCTCTGCCCTGCAGAAGTCCATCCGTGGCTCCGATGTCAATGCTAGCCTCCACTACGCAGCTCGGCTCGTTGA
GGCAGGAGATCTGCCTAGCCTAGCTCGACGCCTGACCGTTATCGCTTACGAAGATATTGGTCTGGCAAATCCAGACGCTC
AAGTCCATACCGTTACAGCTCTGGAAGCAGCCCAGCGGATTGGTTTTCCTGAAGCCCGCATCCTTATTGCCAATATTGTT
ATCGATCTGGCTCTCTCTCCCAAATCCAACTCAGCCTATACGGCCATGGATAAGGCCTTAGCTGACCTACGAAAGAATGG
AAACCTGCCCATTCCCCGCCATTTACGCGACGGTCACTATACCGGCAGCAAGGCATTGGGCAACGCACTAGACTATCTCT
ACCCTCACTCCTATCCTGGCAATTGGGTCAAGCAAGACTATCTGCCTGACAAGATAAAAGACGCCGATTATTTCACTCCC
AATGAAAATGGCAAATACGAGCGAGCCCTTGGCATGACGAAAGATAAGATTGATCACCTCAAAAAAGACTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.145

97.872

0.589

Multiple sequence alignment