Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AIT23_RS13225 Genome accession   NZ_CP074592
Coordinates   2763887..2764501 (-) Length   204 a.a.
NCBI ID   WP_020843815.1    Uniprot ID   S5MU36
Organism   Salmonella bongori serovar 40:z35:- strain CFSAN001045     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2758887..2769501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AIT23_RS13210 (AIT23_13205) helD 2759114..2761168 (-) 2055 WP_213892219.1 DNA helicase IV -
  AIT23_RS13215 (AIT23_13210) - 2761291..2761737 (+) 447 WP_001261225.1 YccF domain-containing protein -
  AIT23_RS13220 (AIT23_13215) yccS 2761756..2763909 (+) 2154 WP_079773342.1 YccS family putative transporter -
  AIT23_RS13225 (AIT23_13220) sxy/tfoX 2763887..2764501 (-) 615 WP_020843815.1 TfoX/Sxy family DNA transformation protein Regulator
  AIT23_RS13230 (AIT23_13225) sulA 2764718..2765227 (+) 510 WP_038390870.1 SOS-induced cell division inhibitor SulA -
  AIT23_RS13235 (AIT23_13230) ompA 2765584..2766633 (+) 1050 WP_079773343.1 porin OmpA -
  AIT23_RS13240 (AIT23_13235) matP 2766703..2767155 (-) 453 WP_000877171.1 macrodomain Ter protein MatP -
  AIT23_RS13245 (AIT23_13240) - 2767341..2769101 (+) 1761 WP_079773344.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23622.38 Da        Isoelectric Point: 9.2752

>NTDB_id=565547 AIT23_RS13225 WP_020843815.1 2763887..2764501(-) (sxy/tfoX) [Salmonella bongori serovar 40:z35:- strain CFSAN001045]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVSYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKFSLEAAMKEKHSRFSQHRLKDLPNMTFHLETLLNESGIKDESMLRVLGAKMCWLRLRQNN
PLLTVKILYALEGAIVGVHEAALPTNRRQELADWVHSLTAAQAR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=565547 AIT23_RS13225 WP_020843815.1 2763887..2764501(-) (sxy/tfoX) [Salmonella bongori serovar 40:z35:- strain CFSAN001045]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCATCTTTGGGGACGATTCAGTATCGATCTTT
ATTCGGCAGCTATAGCCTGACCGTGGAAGATACCGTTTTTGCGATGGTGGCGAATGGCGAGCTCTATCTCCGCGCCTGTG
AACAAAGCGTATCCTATTGTGTGAAGCATCCTCCTGTCTGGCTCACGTTTATGAAATGTGGACGCCCCGTTATGCTCAAC
TATTACCGGGTCGATGAAAGCCTCTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTTTTCTCTTGAAGCGGCAAT
GAAAGAAAAACATAGCCGTTTTTCACAGCACAGGCTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAGCATGTTACGCGTACTGGGCGCTAAAATGTGCTGGCTGAGGCTGCGACAAAATAAT
CCGTTGCTAACGGTAAAGATCCTGTATGCGTTGGAAGGCGCCATTGTTGGCGTACATGAGGCGGCGCTCCCGACAAATCG
TCGCCAGGAGCTTGCCGACTGGGTGCATTCGCTTACGGCTGCGCAAGCCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5MU36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.248

99.02

0.745