Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LU695_RS08245 Genome accession   NZ_CP092500
Coordinates   1704507..1705934 (-) Length   475 a.a.
NCBI ID   WP_000980542.1    Uniprot ID   -
Organism   Escherichia coli strain A30     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1699507..1710934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU695_RS08215 (LU695_08205) yeeY 1699655..1700584 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LU695_RS08220 (LU695_08210) yoeI 1700799..1700861 (+) 63 WP_010723108.1 membrane protein YoeI -
  LU695_RS08225 (LU695_08215) plaP 1700851..1702209 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LU695_RS08230 (LU695_08220) - 1702357..1703054 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -
  LU695_RS08235 (LU695_08225) tsuA 1703165..1704223 (+) 1059 WP_096973626.1 thiosulfate utilization transporter TsuA/YeeE -
  LU695_RS08240 (LU695_08230) tsuB 1704237..1704464 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LU695_RS08245 (LU695_08235) sbcB 1704507..1705934 (-) 1428 WP_000980542.1 exodeoxyribonuclease I Machinery gene
  LU695_RS08250 (LU695_08240) dacD 1706143..1707309 (+) 1167 WP_258314221.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LU695_RS08255 (LU695_08245) sbmC 1707428..1707901 (+) 474 WP_096973635.1 DNA gyrase inhibitor SbmC -
  LU695_RS08260 (LU695_08250) yeeA 1708100..1709158 (+) 1059 WP_096973636.1 FUSC family protein -
  LU695_RS08265 (LU695_08255) tmaR 1709330..1709659 (+) 330 WP_000450409.1 DUF496 family protein -
  LU695_RS08270 (LU695_08260) - 1709760..1710125 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.73 Da        Isoelectric Point: 5.2395

>NTDB_id=565535 LU695_RS08245 WP_000980542.1 1704507..1705934(-) (sbcB) [Escherichia coli strain A30]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=565535 LU695_RS08245 WP_000980542.1 1704507..1705934(-) (sbcB) [Escherichia coli strain A30]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGAGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAATTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAACCCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581