Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SITYG_RS08045 Genome accession   NZ_AP014880
Coordinates   1579354..1579812 (-) Length   152 a.a.
NCBI ID   WP_003074423.1    Uniprot ID   A0A380L5S7
Organism   Streptococcus intermedius strain TYG1620     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574354..1584812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS08030 (SITYG_15840) - 1575347..1575760 (-) 414 WP_096363104.1 cupin domain-containing protein -
  SITYG_RS08035 (SITYG_15850) rcrQ 1575845..1577605 (-) 1761 WP_096363105.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08040 (SITYG_15860) rcrP 1577595..1579361 (-) 1767 WP_003075874.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08045 (SITYG_15870) rcrR 1579354..1579812 (-) 459 WP_003074423.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SITYG_RS08050 (SITYG_15880) - 1579984..1581171 (-) 1188 WP_096363106.1 NADH-dependent flavin oxidoreductase -
  SITYG_RS08055 (SITYG_15890) - 1581438..1581848 (-) 411 WP_048785532.1 peptide deformylase -
  SITYG_RS08060 (SITYG_15900) scrK 1581914..1582813 (-) 900 WP_048785530.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17709.68 Da        Isoelectric Point: 9.0561

>NTDB_id=56551 SITYG_RS08045 WP_003074423.1 1579354..1579812(-) (rcrR) [Streptococcus intermedius strain TYG1620]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDCGKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSEADKRAKIIRLTSESKERMNKIRDFFDEMDRCLLTGISEEDLVTFFQVMGKFYQNIEKLEKGEANG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=56551 SITYG_RS08045 WP_003074423.1 1579354..1579812(-) (rcrR) [Streptococcus intermedius strain TYG1620]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGGAAGACACATCTGATGATTCAAAAAATTGCCAAAGAGCGAGG
GATTGAATTTATGGCGGGTCCACAAGGGCAAGTATTGCATTTTGTGAATCACCGAGAAGATTGTGGCAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGAATTACCAAGTCAGTTGCTAGTAACTTAATGAAGCGAATGGTTAAAAATGGCCTG
ATTTATCTGGAAGTGAGTGAAGCAGATAAACGCGCTAAGATTATTCGTTTGACATCAGAATCAAAAGAGCGCATGAATAA
AATTCGGGATTTCTTTGATGAGATGGATCGCTGCTTATTGACTGGCATTTCAGAAGAAGATTTGGTGACTTTTTTTCAGG
TAATGGGAAAATTTTACCAGAATATTGAAAAATTAGAAAAAGGAGAAGCGAATGGTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380L5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.151

96.053

0.414

Multiple sequence alignment