Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   LU695_RS00375 Genome accession   NZ_CP092500
Coordinates   76534..77202 (+) Length   222 a.a.
NCBI ID   WP_001298959.1    Uniprot ID   Q31UY8
Organism   Escherichia coli strain A30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 71534..82202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU695_RS00345 (LU695_00345) yicC 71553..72416 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  LU695_RS00350 (LU695_00350) rph 72543..73259 (+) 717 WP_001247089.1 ribonuclease PH -
  LU695_RS00355 (LU695_00355) pyrE 73325..73966 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  LU695_RS00360 (LU695_00360) slmA 74003..74599 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  LU695_RS00365 (LU695_00365) dut 74706..75164 (-) 459 WP_000976070.1 dUTP diphosphatase -
  LU695_RS00370 (LU695_00370) coaBC 75142..76362 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  LU695_RS00375 (LU695_00375) radC 76534..77202 (+) 669 WP_001298959.1 RadC family protein Machinery gene
  LU695_RS00380 (LU695_00380) rpmB 77419..77655 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  LU695_RS00385 (LU695_00385) rpmG 77676..77843 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  LU695_RS00390 (LU695_00390) mutM 77941..78750 (+) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  LU695_RS00395 (LU695_00395) coaD 78789..79268 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  LU695_RS00400 (LU695_00400) waaA 79276..80553 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  LU695_RS00405 (LU695_00405) rfaQ 80966..82024 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25274.35 Da        Isoelectric Point: 7.9748

>NTDB_id=565507 LU695_RS00375 WP_001298959.1 76534..77202(+) (radC) [Escherichia coli strain A30]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=565507 LU695_RS00375 WP_001298959.1 76534..77202(+) (radC) [Escherichia coli strain A30]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGCATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31UY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496