Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKD48_RS10535 Genome accession   NZ_CP092475
Coordinates   2067711..2068682 (-) Length   323 a.a.
NCBI ID   WP_000876310.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062711..2073682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS10510 murB 2063291..2064214 (+) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -
  MKD48_RS10515 - 2064232..2064546 (+) 315 WP_001123293.1 CHY zinc finger protein -
  MKD48_RS10520 - 2064863..2065891 (-) 1029 WP_000754457.1 siderophore ABC transporter substrate-binding protein -
  MKD48_RS10525 - 2066010..2066771 (-) 762 WP_000616864.1 ABC transporter ATP-binding protein -
  MKD48_RS10530 - 2066768..2067724 (-) 957 WP_001245584.1 iron chelate uptake ABC transporter family permease subunit -
  MKD48_RS10535 ceuB 2067711..2068682 (-) 972 WP_000876310.1 ABC transporter permease Machinery gene
  MKD48_RS10540 nrdF 2069052..2070023 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  MKD48_RS10545 nrdE 2070143..2072248 (-) 2106 WP_248313585.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  MKD48_RS10550 nrdI 2072211..2072609 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35528.02 Da        Isoelectric Point: 10.1963

>NTDB_id=565415 MKD48_RS10535 WP_000876310.1 2067711..2068682(-) (ceuB) [Staphylococcus aureus strain P5]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSIGGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=565415 MKD48_RS10535 WP_000876310.1 2067711..2068682(-) (ceuB) [Staphylococcus aureus strain P5]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGTAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAATTAGTATTTGCTGTTATTTGCAGCATCGGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTTGCTAGTTTTACAACGTTTATCTCATTACGT
ACGAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCTTATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474