Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KIJ28_RS07420 Genome accession   NZ_CP074578
Coordinates   1640468..1641184 (+) Length   238 a.a.
NCBI ID   WP_213631658.1    Uniprot ID   -
Organism   Pseudomonas syringae strain Susan2139     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1635468..1646184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIJ28_RS07400 (KIJ28_07400) - 1635548..1636171 (+) 624 WP_122255053.1 glutathione S-transferase -
  KIJ28_RS07405 (KIJ28_07405) - 1636355..1637287 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  KIJ28_RS07410 (KIJ28_07410) - 1637284..1638072 (+) 789 WP_010405533.1 ABC transporter permease -
  KIJ28_RS07415 (KIJ28_07415) comA 1638209..1640425 (+) 2217 WP_213631657.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KIJ28_RS07420 (KIJ28_07420) exbB 1640468..1641184 (+) 717 WP_213631658.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KIJ28_RS07425 (KIJ28_07425) - 1641181..1641612 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  KIJ28_RS07430 (KIJ28_07430) lpxK 1641612..1642607 (+) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  KIJ28_RS07435 (KIJ28_07435) - 1642625..1642810 (+) 186 WP_002552679.1 Trm112 family protein -
  KIJ28_RS07440 (KIJ28_07440) kdsB 1642807..1643571 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KIJ28_RS07445 (KIJ28_07445) murB 1643606..1644625 (+) 1020 WP_044311729.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25720.28 Da        Isoelectric Point: 8.5503

>NTDB_id=565407 KIJ28_RS07420 WP_213631658.1 1640468..1641184(+) (exbB) [Pseudomonas syringae strain Susan2139]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAG
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERHLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=565407 KIJ28_RS07420 WP_213631658.1 1640468..1641184(+) (exbB) [Pseudomonas syringae strain Susan2139]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAACTGGACGGCGAAAAACTCAAGCAACTGCGCGCTGGC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCCACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGTTCAGGGGCCACCGCCAACGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCG
CTTCCTGCAGAGCCGCGTCGATGAGCTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(81-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

77.619

88.235

0.685