Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SITYG_RS06895 Genome accession   NZ_AP014880
Coordinates   1365968..1369240 (-) Length   1090 a.a.
NCBI ID   WP_096363008.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1360968..1374240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS06890 (SITYG_13610) rexA 1362291..1365971 (-) 3681 WP_096363007.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SITYG_RS06895 (SITYG_13620) rexB 1365968..1369240 (-) 3273 WP_096363008.1 ATP-dependent nuclease subunit B Machinery gene
  SITYG_RS06900 (SITYG_13630) - 1369362..1370576 (-) 1215 WP_096363009.1 ABC transporter permease -
  SITYG_RS06905 (SITYG_13640) - 1370573..1371466 (-) 894 WP_003072123.1 ABC transporter ATP-binding protein -
  SITYG_RS06910 (SITYG_13660) - 1371671..1371964 (-) 294 WP_020998416.1 hypothetical protein -
  SITYG_RS06915 (SITYG_13670) - 1371942..1372343 (-) 402 WP_096363010.1 hypothetical protein -
  SITYG_RS06920 (SITYG_13680) - 1372325..1373593 (-) 1269 WP_096363011.1 triacylglycerol lipase -
  SITYG_RS06925 (SITYG_13690) - 1373595..1373990 (-) 396 WP_096363012.1 hypothetical protein -

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125480.52 Da        Isoelectric Point: 5.1760

>NTDB_id=56539 SITYG_RS06895 WP_096363008.1 1365968..1369240(-) (rexB) [Streptococcus intermedius strain TYG1620]
MKLLYTDIRNPLTTILVKEAERLAQEGKRVFYIAPNSLSFEKERVVLSQLTHQASFAITVTRFTQMARYFVLNDIQQGSP
LDDIGLGMLFYKVLSEMDEKDLRVYGGIRTDAQFIQQLVELYHELQSAQMTFTDLEHLEEDEKKADFIKILQAVTQQINQ
SEFSSESNIMTFANHIMTGDVDKELQDLVLVIDGFTRFSAEEAYLVELLHSKGVEIVIGVYASEKAYRTSFREGNLYQAS
VDFLRQLADKYEVKPEHRLATPLDDAFGNISKLLESRYDFSDVDLELTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVEAYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLNQE
ELDLFEQYICFADIKGMGKFSKEFTHNQHQKFDLIRINHLRKEIVTPLLDFLKSRSQTAMGLLQNFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFASVFSASKIKLDDFLTLVQSGMLLSNYRTVPATVDVVTVQSYDLIEPLSSPF
VYAIGLTQDYFPKIVQNKSLLSDEDRLLLNEATGEHSELVIATQENLKKNRFVALSLLNAATDRLVLSTPQIVNEIENNI
SSYLLELHEQPIALPIEVKRPQATSDDIGTYRGLLARIIELNQGEIDKERSLTDKDQTFWAVAVRVLRKRLENEGISIPN
VTSSLETETLSDQTLQVLYPPHQVFLLSTSALTEFYRNQYAYFLKYVLALQDEMTIHPDARSHGNFLHRVFEKVMQDSSS
EQFDYRLEKAIQETSQEAEFKAIYTENAVALFAHEVLLDTARATGLVLEKNDLVDTIQEEAVFGQEDVNFLSLSDGRKLQ
IRGKVDRIDRLRSNNSLGIVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQEKWVDDGTQFFGAMYLQMGNPLVPLAKTK
SYDDTVKEAMKILEYKGLFLSDQAHQLNNLYNKKKVNLLSQEELETLLAYNALLYRRAAEQILTGHFKINPYTENGKSIA
PFVEQYKSITGFEANLHLSRARHLVKLDKHSAGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=56539 SITYG_RS06895 WP_096363008.1 1365968..1369240(-) (rexB) [Streptococcus intermedius strain TYG1620]
ATGAAATTACTTTATACAGATATTCGCAATCCCTTAACAACGATTTTGGTGAAAGAAGCAGAGCGCTTGGCACAGGAAGG
TAAGCGCGTGTTTTATATTGCTCCTAACTCTCTTTCATTTGAAAAGGAGAGAGTAGTTTTAAGCCAGCTCACTCATCAAG
CGTCCTTTGCTATTACAGTGACGCGTTTTACCCAGATGGCACGCTATTTTGTCCTCAATGATATACAGCAAGGTAGCCCA
TTAGATGATATTGGTCTGGGAATGTTATTTTACAAAGTCTTGTCAGAAATGGATGAGAAGGACTTGCGAGTGTATGGCGG
TATCCGCACGGATGCACAATTTATTCAGCAGTTGGTTGAACTTTATCATGAGTTGCAGAGTGCTCAGATGACGTTCACGG
ATTTGGAACATCTGGAAGAAGATGAGAAGAAAGCAGATTTCATCAAGATTTTGCAGGCTGTTACACAGCAGATCAATCAG
AGTGAGTTTAGTTCTGAATCAAATATTATGACCTTTGCCAATCATATAATGACAGGTGATGTAGATAAGGAATTGCAAGA
TTTAGTCTTGGTGATTGATGGCTTTACGCGTTTTTCTGCTGAGGAAGCCTACTTGGTTGAGCTACTGCATAGCAAGGGAG
TGGAAATTGTTATTGGTGTTTATGCAAGCGAAAAAGCATACCGTACAAGTTTTCGAGAGGGAAATCTCTATCAAGCTAGT
GTTGATTTCTTGCGACAGTTGGCAGATAAATATGAAGTGAAGCCTGAGCATAGACTAGCAACACCATTAGATGATGCATT
TGGAAATATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAGAGTTAACGGAGCAGGATCGCTCGC
ATGTGCAGATTTGGTCGACAGTCAATCAAAAGGAAGAATTAGAATATGTGGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTGGGAGATGTGGAAGCGTATCATTTACAGTTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTCTATGGTCATTTAAACCAAGAA
GAGTTAGACTTGTTTGAGCAATATATCTGCTTTGCAGATATAAAAGGAATGGGTAAGTTTTCTAAGGAATTTACTCACAA
TCAACATCAAAAATTTGATCTCATTCGCATCAATCACTTAAGAAAAGAAATAGTCACTCCTCTTTTGGATTTTTTAAAAT
CTCGTAGTCAAACAGCAATGGGGTTACTTCAAAACTTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGTCATGTTTTGGAACA
GTTTGCCAGTGTCTTTTCAGCCAGCAAGATTAAGCTAGATGATTTTTTGACCTTGGTGCAGTCGGGAATGCTGTTATCTA
ATTATCGGACTGTTCCAGCAACAGTAGATGTCGTAACTGTTCAGTCTTATGATTTAATTGAGCCTTTGTCGAGTCCTTTT
GTCTATGCTATTGGTTTGACCCAAGATTATTTTCCAAAAATTGTCCAAAATAAGAGTCTTTTATCAGATGAAGATCGTTT
ATTGTTAAATGAAGCGACAGGCGAGCACTCAGAATTGGTGATTGCTACTCAGGAAAATCTTAAGAAAAATCGTTTTGTTG
CCTTGTCACTGTTGAATGCGGCAACAGACAGATTAGTTCTCTCTACTCCTCAGATTGTCAATGAAATAGAAAACAATATT
TCTTCCTATTTACTAGAACTACATGAACAACCAATTGCTTTGCCAATTGAAGTGAAGCGTCCACAGGCAACGAGTGATGA
TATTGGTACTTACCGCGGTTTATTGGCAAGGATTATTGAATTAAATCAAGGAGAGATTGACAAAGAGCGTTCTTTGACTG
ATAAAGACCAGACTTTTTGGGCAGTTGCCGTACGAGTTTTGCGCAAAAGATTAGAAAATGAAGGTATTTCGATTCCTAAT
GTAACATCAAGTCTTGAAACAGAGACTTTGTCAGATCAGACCTTACAGGTTCTTTATCCGCCTCATCAAGTATTTTTACT
ATCAACTTCAGCCTTGACAGAATTCTATCGTAATCAGTATGCTTATTTTTTGAAGTATGTCCTAGCTCTACAAGATGAAA
TGACGATCCATCCAGATGCGCGCAGTCATGGAAATTTTCTGCATCGTGTGTTTGAAAAAGTCATGCAAGATTCATCAAGT
GAGCAGTTTGATTATCGGCTAGAAAAAGCTATTCAAGAAACGAGCCAGGAAGCGGAATTTAAAGCGATTTATACTGAAAA
TGCAGTAGCTTTATTTGCGCATGAAGTGTTGCTTGATACGGCGCGTGCAACAGGGCTCGTTTTAGAAAAAAATGATTTGG
TAGATACTATTCAAGAAGAAGCGGTTTTTGGACAAGAAGATGTGAACTTTTTAAGCTTATCAGATGGACGTAAGCTTCAA
ATTCGCGGGAAAGTTGACCGAATTGACCGATTGAGGAGTAATAACAGTTTAGGAATTGTAGATTATAAATCAAGTGATAC
GAATTTTGATTTTCAAAAATTTTTTAATGGCTTAAATTCTCAATTACCAACCTATCTAGCGGCATTGAAGCAAGAAAAGT
GGGTAGATGATGGTACGCAATTTTTTGGAGCTATGTATTTACAGATGGGTAACCCACTTGTGCCTTTAGCTAAAACGAAG
TCGTACGATGATACGGTCAAAGAAGCGATGAAAATTCTGGAATATAAGGGCTTGTTTTTATCTGATCAAGCTCATCAGCT
CAATAACTTGTATAATAAAAAGAAAGTCAATTTGTTAAGTCAAGAAGAACTAGAAACTTTGTTAGCTTATAATGCACTTT
TGTACCGTCGTGCTGCCGAGCAGATATTGACAGGGCATTTTAAGATTAATCCTTATACAGAAAATGGCAAAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCGATTACGGGCTTTGAAGCCAATCTTCATCTTTCTAGAGCCCGACATTTGGTTAAGCT
AGATAAGCACTCAGCAGGTGAAAAAAAACGTCAAGCGTGGATAGAAAAGATGAAGGAGGAGCTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.869

100

0.563

Multiple sequence alignment