Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHZ70_RS19530 Genome accession   NZ_CP074576
Coordinates   4021102..4021638 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain CS18F     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4016102..4026638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHZ70_RS19510 (KHZ70_19520) soxR 4017831..4018295 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  KHZ70_RS19515 (KHZ70_19525) soxS 4018381..4018704 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  KHZ70_RS19520 (KHZ70_19530) pdeC 4018707..4020293 (-) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  KHZ70_RS19525 (KHZ70_19535) yjcB 4020722..4021003 (+) 282 WP_001295689.1 YjcB family protein -
  KHZ70_RS19530 (KHZ70_19540) ssb 4021102..4021638 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  KHZ70_RS19535 (KHZ70_19545) uvrA 4021893..4024715 (+) 2823 WP_113415984.1 excinuclease ABC subunit UvrA -
  KHZ70_RS19540 (KHZ70_19550) yjbR 4024750..4025106 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  KHZ70_RS19545 (KHZ70_19555) yjbQ 4025110..4025526 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  KHZ70_RS19550 (KHZ70_19560) aphA 4025637..4026350 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=565379 KHZ70_RS19530 WP_000168305.1 4021102..4021638(-) (ssb) [Escherichia coli strain CS18F]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=565379 KHZ70_RS19530 WP_000168305.1 4021102..4021638(-) (ssb) [Escherichia coli strain CS18F]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489