Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KHZ70_RS12465 Genome accession   NZ_CP074576
Coordinates   2566409..2567038 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CS18F     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2561409..2572038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHZ70_RS12450 (KHZ70_12460) helD 2561651..2563705 (-) 2055 WP_001317751.1 DNA helicase IV -
  KHZ70_RS12455 (KHZ70_12465) yccF 2563828..2564274 (+) 447 WP_001261236.1 YccF domain-containing protein -
  KHZ70_RS12460 (KHZ70_12470) yccS 2564284..2566446 (+) 2163 WP_000875041.1 YccS family putative transporter -
  KHZ70_RS12465 (KHZ70_12475) sxy/tfoX 2566409..2567038 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KHZ70_RS12470 (KHZ70_12480) sulA 2567257..2567766 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  KHZ70_RS12475 (KHZ70_12485) ompA 2568123..2569160 (+) 1038 WP_121865560.1 porin OmpA -
  KHZ70_RS12480 (KHZ70_12490) matP 2569236..2569688 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KHZ70_RS12485 (KHZ70_12495) ycbZ 2569874..2571634 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=565376 KHZ70_RS12465 WP_000839153.1 2566409..2567038(-) (sxy/tfoX) [Escherichia coli strain CS18F]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=565376 KHZ70_RS12465 WP_000839153.1 2566409..2567038(-) (sxy/tfoX) [Escherichia coli strain CS18F]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1