Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SITYG_RS06605 Genome accession   NZ_AP014880
Coordinates   1303724..1305958 (-) Length   744 a.a.
NCBI ID   WP_096362976.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1298724..1310958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS06595 (SITYG_13030) - 1299784..1302885 (-) 3102 WP_096362975.1 DNA polymerase III subunit alpha -
  SITYG_RS10630 (SITYG_13040) - 1303017..1303252 (+) 236 Protein_1280 GntR family transcriptional regulator -
  SITYG_RS10635 - 1303265..1303587 (+) 323 Protein_1281 ATP-binding cassette domain-containing protein -
  SITYG_RS06605 (SITYG_13060) recJ 1303724..1305958 (-) 2235 WP_096362976.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SITYG_RS06610 (SITYG_13070) - 1306057..1306464 (-) 408 WP_096362977.1 GNAT family N-acetyltransferase -
  SITYG_RS06615 (SITYG_13080) - 1306448..1307179 (-) 732 WP_096362978.1 class I SAM-dependent methyltransferase -
  SITYG_RS06620 (SITYG_13090) - 1307189..1307944 (-) 756 WP_096362979.1 SDR family NAD(P)-dependent oxidoreductase -
  SITYG_RS06625 (SITYG_13100) - 1307954..1308562 (-) 609 WP_003072228.1 histidine phosphatase family protein -
  SITYG_RS06630 (SITYG_13110) rnz 1308608..1309537 (-) 930 WP_096362980.1 ribonuclease Z -
  SITYG_RS06635 (SITYG_13120) - 1309548..1310177 (-) 630 WP_096362981.1 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83582.55 Da        Isoelectric Point: 4.4732

>NTDB_id=56534 SITYG_RS06605 WP_096362976.1 1303724..1305958(-) (recJ) [Streptococcus intermedius strain TYG1620]
MITSKYDWQIATNFSDEGFIKQSQKLGLEPSVANLVYQRGIQTEEAMRDFLEASLDKLHDPYELHDMEKAVTRIRQAIEN
DEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIDNQGISLFITVDNGVAGLEAIELAQ
SMGVDVIVTDHHSMPEELPNAYAIIHPEHPEADYPFKYLAGCGVAFKLATALLEEVQIELLDLVAIGTIADMVSLTGENR
ILVKYGLSILKNTQRIGLQELFKISGIQEDEVDEEIVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDVALMINQKN
AERKEMVQHIYDEAKFMIDPKKPVQVLAGKGWNPGVLGIVAGRLLEELHQPIIVLNIENGLAKGSARSIETVDIFEALDP
HRELFVAFGGHAGAAGMTLDASRLEELSQVLTAYIENNQLDLSTKNDLFLDEELALPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKVENARTMGAGNAHLKLKISQADVAFDVIAFAQGELATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVN
GIQLFNIRGKNARLPENVPILRFSEEIPDLGNSRSVVVYDVPNQLEQLKMIIQQGHFEAIYFKNEIAHPYYLTGFGTRAQ
FAKLYKTIYQFPEFDIRYKLKKLAAYLNIDSILLIKMIQIFEELGFVTVQDGVMRVNKEAEKKAIESSHIYQELKKIVKE
QELMALGTVQEIYDYLMEKDECSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=56534 SITYG_RS06605 WP_096362976.1 1303724..1305958(-) (recJ) [Streptococcus intermedius strain TYG1620]
ATGATTACATCAAAATATGATTGGCAAATTGCTACAAATTTTTCAGATGAGGGCTTTATCAAACAATCTCAAAAACTCGG
CTTGGAACCTTCGGTAGCCAATTTGGTATACCAGAGAGGGATTCAGACAGAAGAAGCAATGCGAGACTTTCTAGAAGCTA
GTTTGGACAAGCTACACGATCCTTATGAACTTCATGATATGGAGAAGGCGGTGACGCGCATTCGTCAAGCGATTGAAAAT
GATGAACAAATCTTGATTTATGGAGATTACGATGCGGATGGAATGACTTCAGCTTCCATTGTTAAAGAAGCGTTAGAGCA
ACTTGGAGCAGAGTGTCAGGTCTATCTGCCCAATCGATTTACAGATGGTTATGGTCCTAACGCGAGCGTTTATAAGTATT
TTATTGATAATCAGGGTATTTCCCTCTTCATTACAGTGGATAATGGAGTTGCAGGATTGGAAGCTATTGAGTTAGCCCAG
TCCATGGGAGTGGATGTCATCGTAACAGATCACCACTCTATGCCTGAGGAGCTGCCAAATGCCTATGCTATCATCCATCC
GGAACATCCAGAAGCTGATTATCCTTTTAAGTACTTAGCTGGTTGCGGCGTGGCTTTTAAGTTAGCGACTGCCCTTTTAG
AGGAAGTGCAGATTGAGTTGTTGGATCTAGTCGCTATCGGCACTATTGCGGATATGGTCAGCTTGACAGGTGAGAATCGG
ATTTTGGTCAAATATGGCTTATCTATTTTGAAAAACACTCAGCGCATCGGCTTGCAAGAACTTTTTAAGATTTCGGGCAT
TCAGGAAGATGAAGTGGATGAAGAAATAGTTGGTTTTCAGATAGCTCCTAGACTCAATGCTCTAGGTCGATTGGATGATC
CAAATCCTGCTATTGAACTTCTGACTGGTTTTGATGAAGAAGAAGCGCGTGACGTCGCCCTGATGATTAATCAGAAAAAT
GCCGAACGCAAGGAGATGGTGCAGCATATCTATGATGAAGCTAAGTTTATGATTGATCCTAAGAAGCCTGTTCAGGTTCT
AGCTGGTAAGGGTTGGAATCCAGGTGTTTTGGGAATTGTAGCAGGGCGACTTTTAGAAGAGTTGCATCAGCCGATTATCG
TGCTGAATATTGAAAATGGTTTAGCAAAAGGTAGTGCTCGCAGCATTGAAACAGTTGATATTTTTGAAGCTCTAGATCCT
CACCGAGAGTTATTTGTAGCTTTTGGTGGGCATGCTGGGGCAGCTGGCATGACTCTTGACGCCAGTCGATTAGAAGAACT
CAGTCAGGTTTTGACGGCCTATATTGAAAATAATCAGCTGGATTTGTCTACTAAGAATGACCTTTTTTTGGATGAAGAAC
TAGCTTTGCCAGATCTGACGCTGGAAACTCTTAAAAACTTTGAAAAACTTGCTCCTTTTGGTATGGATAATAAAAAACCT
GTTTTCTATTTAAAAGATTTTAAAGTTGAAAATGCTCGTACCATGGGGGCAGGAAATGCTCACCTGAAACTAAAAATTTC
TCAGGCTGATGTTGCTTTTGATGTAATAGCTTTTGCACAAGGCGAACTTGCTACAGAATTTTCTCAAACTAAAAATTTAG
AGTTAGCAGTGACTCTGTCGGTCAATAAATGGAATGGTCAGACTAGTCTGCAACTTATGTTGGTAGACGCTCGAGTCAAC
GGAATTCAGCTCTTTAATATTCGAGGTAAAAATGCTCGCTTACCTGAAAATGTACCTATTCTGCGTTTTTCAGAAGAAAT
ACCTGATTTGGGAAATAGTAGATCAGTTGTGGTCTATGACGTCCCCAATCAACTAGAACAACTAAAAATGATTATTCAAC
AAGGACATTTTGAAGCCATTTACTTTAAAAATGAGATTGCTCACCCCTATTATCTGACAGGTTTTGGAACGAGAGCCCAA
TTTGCCAAACTCTATAAAACGATTTATCAGTTTCCGGAGTTTGATATACGTTATAAACTAAAAAAGTTGGCTGCTTATCT
CAACATTGATTCAATTCTACTCATAAAGATGATTCAAATTTTTGAAGAACTGGGTTTTGTAACGGTTCAAGATGGAGTGA
TGCGAGTTAACAAGGAAGCAGAAAAAAAGGCTATTGAGAGTAGCCATATTTATCAAGAACTCAAAAAAATAGTCAAGGAG
CAGGAGCTGATGGCTCTAGGAACTGTTCAAGAAATTTATGATTATCTGATGGAAAAGGATGAATGTTCAAACTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-733)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

73.784

99.462

0.734
  recJ Bacillus subtilis subsp. subtilis str. 168

38.015

100

0.397

Multiple sequence alignment