Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KIH94_RS13680 Genome accession   NZ_CP074571
Coordinates   2644836..2645582 (-) Length   248 a.a.
NCBI ID   WP_015384274.1    Uniprot ID   -
Organism   Bacillus subtilis strain BYS2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2639836..2650582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS13655 (KIH94_13655) mreC 2640242..2641114 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  KIH94_RS13660 (KIH94_13660) mreB 2641145..2642158 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  KIH94_RS13665 (KIH94_13665) radC 2642250..2642945 (-) 696 WP_015384272.1 DNA repair protein RadC -
  KIH94_RS13670 (KIH94_13670) maf 2642982..2643551 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  KIH94_RS13675 (KIH94_13675) spoIIB 2643704..2644702 (-) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  KIH94_RS13680 (KIH94_13680) comC 2644836..2645582 (-) 747 WP_015384274.1 A24 family peptidase Machinery gene
  KIH94_RS13685 (KIH94_13685) folC 2645722..2647014 (-) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KIH94_RS13690 (KIH94_13690) valS 2647074..2649716 (-) 2643 WP_015483523.1 valine--tRNA ligase -
  KIH94_RS13695 (KIH94_13695) - 2650164..2650355 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26378.00 Da        Isoelectric Point: 9.6195

>NTDB_id=565323 KIH94_RS13680 WP_015384274.1 2644836..2645582(-) (comC) [Bacillus subtilis strain BYS2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHMISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=565323 KIH94_RS13680 WP_015384274.1 2644836..2645582(-) (comC) [Bacillus subtilis strain BYS2]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATATGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGAGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98