Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KIH94_RS12435 Genome accession   NZ_CP074571
Coordinates   2429566..2430333 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain BYS2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2424566..2435333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS12415 (KIH94_12415) ppsR 2424740..2425552 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  KIH94_RS12420 (KIH94_12420) ccpN 2425578..2426216 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  KIH94_RS12425 (KIH94_12425) glyS 2426349..2428388 (-) 2040 WP_015384117.1 glycine--tRNA ligase subunit beta -
  KIH94_RS12430 (KIH94_12430) glyQ 2428381..2429268 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  KIH94_RS12435 (KIH94_12435) recO 2429566..2430333 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  KIH94_RS12440 (KIH94_12440) yqzL 2430370..2430513 (-) 144 WP_003230053.1 YqzL family protein -
  KIH94_RS12445 (KIH94_12445) era 2430661..2431566 (-) 906 WP_003230051.1 GTPase Era -
  KIH94_RS12450 (KIH94_12450) - 2431547..2431957 (-) 411 WP_003230049.1 cytidine deaminase -
  KIH94_RS12455 (KIH94_12455) unpK 2432076..2432447 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  KIH94_RS12460 (KIH94_12460) ybeY 2432428..2432901 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  KIH94_RS12465 (KIH94_12465) pgpH 2432902..2435037 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=565315 KIH94_RS12435 WP_015384118.1 2429566..2430333(-) (recO) [Bacillus subtilis strain BYS2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=565315 KIH94_RS12435 WP_015384118.1 2429566..2430333(-) (recO) [Bacillus subtilis strain BYS2]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTATTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATACTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992