Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KIH94_RS07780 Genome accession   NZ_CP074571
Coordinates   1482164..1482442 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain BYS2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477164..1487442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS07760 (KIH94_07760) panEB 1478351..1479262 (+) 912 Protein_1478 ketopantoate reductase family protein -
  KIH94_RS07765 (KIH94_07765) ampS 1479296..1480528 (-) 1233 WP_015383558.1 aminopeptidase -
  KIH94_RS07770 (KIH94_07770) ykpC 1480638..1480772 (-) 135 WP_003238865.1 protein YkpC -
  KIH94_RS07775 (KIH94_07775) mreBH 1480873..1481880 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  KIH94_RS07780 (KIH94_07780) abrB 1482164..1482442 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  KIH94_RS07785 (KIH94_07785) kinC 1482632..1483918 (+) 1287 WP_015383559.1 two-component sensor histidine kinase KinC -
  KIH94_RS07790 (KIH94_07790) ykqA 1483934..1484761 (+) 828 WP_015483181.1 gamma-glutamylcyclotransferase -
  KIH94_RS07795 (KIH94_07795) ktrC 1484824..1485489 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  KIH94_RS07800 (KIH94_07800) ade 1485645..1487378 (+) 1734 WP_015383561.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=565299 KIH94_RS07780 WP_003244728.1 1482164..1482442(+) (abrB) [Bacillus subtilis strain BYS2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=565299 KIH94_RS07780 WP_003244728.1 1482164..1482442(+) (abrB) [Bacillus subtilis strain BYS2]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576