Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KIH94_RS05640 Genome accession   NZ_CP074571
Coordinates   1087570..1088148 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain BYS2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1082570..1093148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH94_RS05620 (KIH94_05620) hemAT 1083081..1084379 (-) 1299 WP_015483047.1 heme-based aerotactic transducer HemAT -
  KIH94_RS05625 (KIH94_05625) comW 1084518..1086047 (-) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  KIH94_RS05630 (KIH94_05630) yhxC 1086159..1087016 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  KIH94_RS05635 (KIH94_05635) yhzC 1087044..1087277 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  KIH94_RS05640 (KIH94_05640) comK 1087570..1088148 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  KIH94_RS05645 (KIH94_05645) yhxD 1088195..1089094 (-) 900 WP_015483051.1 SDR family oxidoreductase -
  KIH94_RS05650 (KIH94_05650) yhjA 1089312..1089581 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  KIH94_RS05655 (KIH94_05655) yhjB 1089625..1091094 (-) 1470 WP_015383277.1 sodium:solute symporter -
  KIH94_RS05660 (KIH94_05660) yhjC 1091091..1091291 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  KIH94_RS05665 (KIH94_05665) - 1091490..1091861 (-) 372 WP_015383278.1 hypothetical protein -
  KIH94_RS05670 (KIH94_05670) yhjE 1092013..1092636 (+) 624 WP_010886465.1 VTT domain-containing protein -
  KIH94_RS05675 (KIH94_05675) lepB 1092638..1093144 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=565285 KIH94_RS05640 WP_015483050.1 1087570..1088148(+) (comK) [Bacillus subtilis strain BYS2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=565285 KIH94_RS05640 WP_015483050.1 1087570..1088148(+) (comK) [Bacillus subtilis strain BYS2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99