Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SITYG_RS05115 Genome accession   NZ_AP014880
Coordinates   1018223..1019293 (+) Length   356 a.a.
NCBI ID   WP_096362848.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1013223..1024293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS05095 (SITYG_09930) guaA 1013545..1015104 (-) 1560 WP_096362846.1 glutamine-hydrolyzing GMP synthase -
  SITYG_RS05100 (SITYG_09940) - 1015246..1015944 (+) 699 WP_020998635.1 GntR family transcriptional regulator -
  SITYG_RS05105 (SITYG_09950) - 1016060..1016392 (+) 333 WP_003069097.1 putative DNA-binding protein -
  SITYG_RS05110 (SITYG_09960) ffh 1016453..1018027 (+) 1575 WP_096362847.1 signal recognition particle protein -
  SITYG_RS05115 (SITYG_09970) xerS 1018223..1019293 (+) 1071 WP_096362848.1 tyrosine recombinase XerS Machinery gene
  SITYG_RS05120 (SITYG_09980) - 1019786..1020946 (-) 1161 WP_096362849.1 ATP-grasp domain-containing protein -
  SITYG_RS05125 (SITYG_09990) - 1020974..1021714 (-) 741 WP_096362850.1 esterase family protein -
  SITYG_RS05130 (SITYG_10000) - 1021733..1022557 (-) 825 WP_096362851.1 alpha/beta hydrolase -
  SITYG_RS05135 (SITYG_10010) trmFO 1022664..1023998 (-) 1335 WP_096362852.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41414.58 Da        Isoelectric Point: 9.7316

>NTDB_id=56525 SITYG_RS05115 WP_096362848.1 1018223..1019293(+) (xerS) [Streptococcus intermedius strain TYG1620]
MKRELLLERIEKLKTILPWYVLEYYQSKLTVPYSFTTLYEYLKEYNRFFQWILDSGIADVSQIAEIPLSVLENMTKKDME
SFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGTETEQFLNYVDEEYPKSLSNRALSSFNKNKERDLAMIALLLASGIRLSEAVNLDLKDLNLKIMVIEVTRKGGKRDS
VNIASFAKPYLERYLEIRSKRYKTEKSDTAFFLTEYRGVPNRIDASSVEKMVAKYSENFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=56525 SITYG_RS05115 WP_096362848.1 1018223..1019293(+) (xerS) [Streptococcus intermedius strain TYG1620]
ATGAAGCGTGAACTACTTTTAGAAAGAATTGAAAAACTAAAGACTATTCTCCCCTGGTATGTTTTGGAATATTATCAATC
TAAATTAACTGTTCCATACAGTTTTACAACCTTATATGAATATCTTAAAGAATACAATCGTTTTTTTCAGTGGATTTTAG
ACTCTGGAATTGCTGATGTCTCACAAATTGCAGAAATTCCTTTATCGGTGTTGGAAAATATGACTAAAAAAGATATGGAA
TCATTTATCCTTTACCTACGGGAACGACCGCTGCTTAATGCTAATACCACGCAAAACGGAGTATCTCAAACAACTATTAA
CCGCACTCTTTCAGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGAGAGCCTTATTTTT
ACCGTAATGTTATGAAAAAAGTGTCCACTAAGAAAAAGAAAGAAACTTTAGCTGCACGAGCTGAAAATATTAAACAAAAG
CTCTTTTTAGGCACGGAAACTGAACAATTTTTGAATTATGTTGATGAAGAATATCCTAAAAGTTTATCTAACCGCGCCCT
CTCCTCTTTCAACAAAAATAAAGAGAGAGATTTGGCGATGATAGCACTACTTCTTGCATCTGGTATTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTCAATCTGAAAATAATGGTCATTGAAGTTACTCGTAAAGGTGGGAAAAGAGATTCT
GTTAATATTGCATCTTTCGCTAAACCTTATTTAGAAAGGTATTTGGAGATTCGATCCAAACGCTATAAAACTGAGAAATC
CGATACTGCCTTCTTTTTGACAGAATATAGAGGAGTCCCCAATCGGATTGACGCATCTAGTGTAGAAAAGATGGTTGCCA
AGTATTCTGAAAACTTTAAGGTTCGAGTGACTCCTCACAAACTCCGCCACACTCTAGCTACTAGGCTTTATGATGCGACC
AAGTCCCAGGTCCTGGTCAGCCATCAGCTAGGACATGCCAGCACTCAGGTCACTGACCTCTATACCCATATCGTTAATGA
TGAGCAAAAGAATGCATTAGATAAATTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(189-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

87.079

100

0.871