Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   MID01_RS21920 Genome accession   NZ_CP092369
Coordinates   4207806..4208600 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain ZW     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4202806..4213600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS21895 (MID01_21895) rocD 4203380..4204585 (-) 1206 WP_041850283.1 ornithine aminotransferase -
  MID01_RS21900 (MID01_21900) rocR 4204826..4206211 (+) 1386 WP_041850282.1 arginine utilization regulatory protein RocR -
  MID01_RS21905 (MID01_21905) - 4206193..4206345 (-) 153 Protein_4273 ATP-binding protein -
  MID01_RS21910 (MID01_21910) - 4206373..4206502 (-) 130 Protein_4274 hypothetical protein -
  MID01_RS21915 (MID01_21915) htrA 4206522..4207724 (-) 1203 WP_041850281.1 serine protease HtrC Regulator
  MID01_RS21920 (MID01_21920) vicX 4207806..4208600 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  MID01_RS21925 (MID01_21925) walI 4208622..4209464 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  MID01_RS21930 (MID01_21930) walH 4209451..4210818 (-) 1368 WP_041850604.1 WalRK two-component regulatory system regulator WalH -
  MID01_RS21935 (MID01_21935) walK 4210808..4212643 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  MID01_RS21940 (MID01_21940) walR 4212651..4213358 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=565088 MID01_RS21920 WP_003226939.1 4207806..4208600(-) (vicX) [Bacillus subtilis strain ZW]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=565088 MID01_RS21920 WP_003226939.1 4207806..4208600(-) (vicX) [Bacillus subtilis strain ZW]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTGCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53