Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MID01_RS19960 Genome accession   NZ_CP092369
Coordinates   3821947..3823080 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain ZW     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3816947..3828080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS19920 (MID01_19920) ywnA 3817081..3817482 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  MID01_RS19925 (MID01_19925) ureC 3817617..3819326 (-) 1710 WP_015714862.1 urease subunit alpha -
  MID01_RS19930 (MID01_19930) ureB 3819323..3819697 (-) 375 WP_041850426.1 urease subunit beta -
  MID01_RS19935 (MID01_19935) ureA 3819694..3820011 (-) 318 WP_003227724.1 urease subunit gamma -
  MID01_RS19940 (MID01_19940) - 3820206..3820364 (-) 159 WP_120363539.1 hypothetical protein -
  MID01_RS19945 (MID01_19945) - 3820568..3820831 (-) 264 WP_231573524.1 ABC transporter -
  MID01_RS19950 (MID01_19950) csbD 3821052..3821240 (-) 189 WP_015251021.1 stress response protein CsbD -
  MID01_RS19955 (MID01_19955) - 3821313..3821792 (-) 480 WP_003244390.1 hypothetical protein -
  MID01_RS19960 (MID01_19960) rapC 3821947..3823080 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  MID01_RS19965 (MID01_19965) moaA 3823272..3824297 (-) 1026 WP_043940213.1 GTP 3',8-cyclase MoaA -
  MID01_RS19970 (MID01_19970) fdhD 3824313..3825101 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  MID01_RS19975 (MID01_19975) - 3825334..3825495 (-) 162 WP_003227706.1 hypothetical protein -
  MID01_RS19980 (MID01_19980) ywmD 3825590..3826264 (-) 675 WP_003243553.1 VWA domain-containing protein -
  MID01_RS19985 (MID01_19985) - 3826317..3826457 (-) 141 WP_003227702.1 hypothetical protein -
  MID01_RS19990 (MID01_19990) ywmC 3826588..3827271 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=565078 MID01_RS19960 WP_003227715.1 3821947..3823080(-) (rapC) [Bacillus subtilis strain ZW]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=565078 MID01_RS19960 WP_003227715.1 3821947..3823080(-) (rapC) [Bacillus subtilis strain ZW]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424