Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MID01_RS11360 Genome accession   NZ_CP092369
Coordinates   2228250..2229386 (+) Length   378 a.a.
NCBI ID   WP_019712879.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZW     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2223250..2234386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID01_RS11335 (MID01_11335) - 2223308..2224129 (+) 822 WP_026009860.1 hypothetical protein -
  MID01_RS11340 (MID01_11340) yomE 2224166..2226100 (+) 1935 WP_109962766.1 phosphodiester glycosidase family protein -
  MID01_RS11345 (MID01_11345) - 2226275..2227342 (+) 1068 WP_019712882.1 N-acetylmuramoyl-L-alanine amidase family protein -
  MID01_RS11350 (MID01_11350) - 2227458..2227850 (+) 393 WP_019712881.1 hypothetical protein -
  MID01_RS11355 (MID01_11355) - 2227871..2228122 (+) 252 WP_019712880.1 phage holin -
  MID01_RS11360 (MID01_11360) rapC 2228250..2229386 (+) 1137 WP_019712879.1 Rap family tetratricopeptide repeat protein Regulator
  MID01_RS11365 (MID01_11365) - 2229376..2229552 (+) 177 WP_019712878.1 hypothetical protein -
  MID01_RS11370 (MID01_11370) uvrX 2229595..2230823 (-) 1229 Protein_2196 UV damage repair protein UvrX -
  MID01_RS11375 (MID01_11375) yolD 2230816..2231148 (-) 333 WP_109962767.1 YolD-like family protein -
  MID01_RS11380 (MID01_11380) - 2231322..2231657 (+) 336 WP_041054825.1 hypothetical protein -
  MID01_RS11385 (MID01_11385) - 2231701..2232060 (-) 360 WP_041338710.1 hypothetical protein -
  MID01_RS11390 (MID01_11390) bsrG 2232321..2232437 (+) 117 WP_009967548.1 type I toxin-antitoxin system toxin BsrG -
  MID01_RS11395 (MID01_11395) - 2232529..2232987 (-) 459 WP_109962768.1 YrhA family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44846.09 Da        Isoelectric Point: 5.1452

>NTDB_id=565020 MID01_RS11360 WP_019712879.1 2228250..2229386(+) (rapC) [Bacillus subtilis strain ZW]
MEQMISSSKVGVKINEWYKYIRLFSVPDSEILKAEVEEEIRHMKEDQDLLLYYSLMCFRHQLMLDYLEPKTLNEERPKIS
DLLEKIESSQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDYPEKAIPHFKNALDKAREIDMSRLIGSSLYNLGLCSFAEEAYEKAS
EYFKEGIRVYQDNGYEHSNRILDILLMLTKTTFKMRNHSEGISWCAHGLSLSKNLNDEIMAKMFEFIHALYVDNDNEKLN
SILNYLELKSMLSDVEDLASDAAKYYNEKEDHKVAVAYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=565020 MID01_RS11360 WP_019712879.1 2228250..2229386(+) (rapC) [Bacillus subtilis strain ZW]
TTGGAGCAGATGATCTCTTCTTCTAAAGTTGGAGTGAAAATAAATGAGTGGTATAAATACATAAGATTATTTAGTGTCCC
AGATTCGGAAATATTGAAAGCTGAGGTCGAGGAAGAAATAAGGCATATGAAAGAAGATCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAGCTGATGCTGGACTACCTTGAACCAAAAACATTGAACGAAGAACGACCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGTAGTCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGGGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAAATTGAAAGAGCTGAATTCCACTATAAAGTTGCAGAAATTTATTATCATATGAAGCAAACACATATGTCGATGCAC
CACATTGTTCAAGCAATCGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTTATCGG
ACTGAACTATTTGGATATGGACTACCCTGAAAAAGCGATCCCTCATTTTAAAAATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTTTACAATCTCGGCTTATGTTCCTTTGCTGAGGAAGCTTATGAAAAGGCATCT
GAGTACTTCAAGGAGGGCATTAGAGTATATCAGGATAATGGGTATGAACATTCAAATCGCATATTAGATATCTTACTTAT
GTTGACAAAAACCACTTTTAAAATGAGAAATCACTCCGAGGGAATTTCTTGGTGTGCACACGGTCTGTCTTTGTCCAAAA
ATTTAAACGATGAGATTATGGCAAAAATGTTTGAATTCATTCATGCCTTATATGTAGATAATGACAATGAAAAATTAAAT
TCAATTCTAAATTATTTAGAATTAAAGTCAATGCTTTCAGACGTGGAGGATTTAGCATCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGCTTATTATGAAAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(343-367)

Tetratricopeptide repeat (TPR_8)

(222-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.031

100

0.484
  rapF Bacillus subtilis subsp. subtilis str. 168

45.789

100

0.46