Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KHV90_RS10210 Genome accession   NZ_CP074448
Coordinates   2142786..2143412 (-) Length   208 a.a.
NCBI ID   WP_048979351.1    Uniprot ID   -
Organism   Enterobacter asburiae strain S3_CRE3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2137786..2148412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHV90_RS10195 (KHV90_10160) helD 2138023..2140077 (-) 2055 WP_048979349.1 DNA helicase IV -
  KHV90_RS10200 (KHV90_10165) - 2140201..2140647 (+) 447 WP_023311032.1 YccF domain-containing protein -
  KHV90_RS10205 (KHV90_10170) yccS 2140667..2142829 (+) 2163 WP_039261616.1 YccS family putative transporter -
  KHV90_RS10210 (KHV90_10175) sxy/tfoX 2142786..2143412 (-) 627 WP_048979351.1 TfoX/Sxy family DNA transformation protein Regulator
  KHV90_RS10215 (KHV90_10180) sulA 2143630..2144139 (+) 510 WP_033145120.1 SOS-induced cell division inhibitor SulA -
  KHV90_RS10220 (KHV90_10185) ompA 2144494..2145549 (+) 1056 WP_115504044.1 porin OmpA -
  KHV90_RS10225 (KHV90_10190) matP 2145613..2146065 (-) 453 WP_032658161.1 macrodomain Ter protein MatP -
  KHV90_RS10230 (KHV90_10195) - 2146252..2148012 (+) 1761 WP_048979352.1 AAA family ATPase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23936.54 Da        Isoelectric Point: 9.4588

>NTDB_id=564999 KHV90_RS10210 WP_048979351.1 2142786..2143412(-) (sxy/tfoX) [Enterobacter asburiae strain S3_CRE3]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHFSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=564999 KHV90_RS10210 WP_048979351.1 2142786..2143412(-) (sxy/tfoX) [Enterobacter asburiae strain S3_CRE3]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTCCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGAGAGCGGCTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAACGAAACCGACTTAAGGATCTGCCAAACCTGACGTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATTACCAATGAGGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAAAAC
AAAGCGCTCGGTATTAAGGTTCTCTTCGCACTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTTCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567