Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   SITYG_RS02510 Genome accession   NZ_AP014880
Coordinates   484233..485009 (-) Length   258 a.a.
NCBI ID   WP_009568142.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 479233..490009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS02480 (SITYG_04700) - 479593..480588 (+) 996 WP_096362579.1 sensor histidine kinase -
  SITYG_RS02485 (SITYG_04710) vraR 480590..481222 (+) 633 WP_009568138.1 response regulator transcription factor Regulator
  SITYG_RS02490 (SITYG_04720) - 481262..482662 (+) 1401 WP_003078255.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  SITYG_RS02495 (SITYG_04730) - 482664..483056 (+) 393 WP_096362580.1 S1 RNA-binding domain-containing protein -
  SITYG_RS02500 (SITYG_04740) - 483176..483493 (-) 318 WP_003073656.1 DUF960 domain-containing protein -
  SITYG_RS02505 (SITYG_04750) - 483613..484146 (-) 534 WP_003073655.1 DUF402 domain-containing protein -
  SITYG_RS02510 (SITYG_04760) recX 484233..485009 (-) 777 WP_009568142.1 recombination regulator RecX Regulator
  SITYG_RS02515 (SITYG_04770) - 485073..485849 (-) 777 WP_096362581.1 aminoglycoside 3'-phosphotransferase -
  SITYG_RS02520 (SITYG_04780) rlmD 485906..487285 (+) 1380 WP_096362582.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  SITYG_RS02525 (SITYG_04790) - 487650..487883 (+) 234 WP_003073647.1 DUF1858 domain-containing protein -
  SITYG_RS02530 (SITYG_04800) - 487883..489244 (+) 1362 WP_096362583.1 DUF438 domain-containing protein -
  SITYG_RS02535 (SITYG_04810) - 489255..489509 (+) 255 WP_003073643.1 DUF1912 family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30362.97 Da        Isoelectric Point: 9.0671

>NTDB_id=56499 SITYG_RS02510 WP_009568142.1 484233..485009(-) (recX) [Streptococcus intermedius strain TYG1620]
MKITKIEKKKHLYLLELDETDKLYITEDTIVHFMLSKGMNISEQELKEIQDYAQFSYGKNLALYYLSFKQRTVKEVRDYL
TKHEISLDTIEKVLTILIKDNWIDDRQYAYSFIHSNLLSGDKGAFVLKQKLTQKGITAPIIDEELCKFDFTEVSQKVAAK
LLRNYQSKLPSKALQDKILQSMLSKGFSYTEAKAAYQTLDIKEDEEIQQKLLYKELDKQYRKYSKKYDGYELKQRLTQAL
ARKGYDFSDIASALREYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=56499 SITYG_RS02510 WP_009568142.1 484233..485009(-) (recX) [Streptococcus intermedius strain TYG1620]
ATGAAAATCACTAAAATTGAAAAGAAAAAGCATCTCTATCTTTTAGAATTGGACGAAACTGACAAACTTTACATCACTGA
AGATACTATCGTTCACTTTATGTTATCAAAAGGCATGAATATCAGTGAGCAAGAATTAAAAGAAATTCAGGACTACGCAC
AGTTTTCTTACGGAAAAAATCTAGCTCTATATTATCTTTCTTTCAAGCAAAGAACTGTCAAAGAAGTGCGGGATTATTTG
ACAAAACACGAGATCTCCTTAGATACCATCGAGAAAGTGCTAACGATTCTCATAAAAGATAACTGGATAGATGACAGACA
ATATGCTTATTCCTTTATTCATTCCAATCTTCTATCTGGTGATAAAGGTGCTTTTGTCCTCAAGCAAAAATTGACTCAAA
AAGGTATCACAGCTCCTATTATTGATGAAGAATTATGCAAATTTGATTTTACAGAAGTAAGTCAAAAAGTCGCTGCAAAA
CTACTCCGCAACTATCAAAGCAAACTACCAAGTAAGGCCCTGCAGGATAAAATTCTTCAATCTATGTTGAGCAAAGGCTT
TTCCTATACCGAAGCTAAGGCAGCTTATCAAACCTTAGACATCAAAGAAGATGAGGAAATTCAGCAGAAATTACTGTACA
AAGAATTAGATAAGCAATACCGCAAGTATTCTAAAAAATATGACGGATATGAGTTAAAACAACGCCTCACCCAAGCACTC
GCTCGCAAAGGCTACGATTTTTCTGATATTGCTAGTGCTCTAAGAGAATATCTATAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.094

100

0.36

Multiple sequence alignment