Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LILO_RS11090 Genome accession   NC_020450
Coordinates   2301055..2302083 (-) Length   342 a.a.
NCBI ID   WP_015427190.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2296055..2307083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS11065 (lilo_2130) - 2296360..2296839 (-) 480 WP_015427186.1 nitroreductase family protein -
  LILO_RS11070 (lilo_2131) - 2296826..2297035 (-) 210 WP_003132661.1 hypothetical protein -
  LILO_RS11075 (lilo_2132) - 2297032..2297859 (-) 828 WP_015427187.1 radical SAM protein -
  LILO_RS12295 (lilo_2133) - 2297852..2299051 (-) 1200 WP_225513542.1 MFS transporter -
  LILO_RS12300 - 2299048..2299974 (-) 927 WP_225513541.1 radical SAM protein -
  LILO_RS11085 (lilo_2134) - 2300077..2300934 (-) 858 WP_015427189.1 transcription regulator -
  LILO_RS11090 (lilo_2135) sepM 2301055..2302083 (-) 1029 WP_015427190.1 SepM family pheromone-processing serine protease Regulator
  LILO_RS11095 (lilo_2136) coaD 2302070..2302567 (-) 498 WP_010906348.1 pantetheine-phosphate adenylyltransferase -
  LILO_RS11100 (lilo_2137) rsmD 2302615..2303154 (-) 540 WP_015427191.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LILO_RS11105 (lilo_2138) - 2303325..2304545 (-) 1221 WP_015427192.1 MDR family MFS transporter -
  LILO_RS11110 (lilo_2139) lmrP 2304627..2305853 (-) 1227 WP_015427193.1 multidrug efflux MFS transporter LmrP -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37410.10 Da        Isoelectric Point: 10.0143

>NTDB_id=56499 LILO_RS11090 WP_015427190.1 2301055..2302083(-) (sepM) [Lactococcus lactis subsp. lactis IO-1]
MKKNKKINPKLKWGISIGLIVVALLALFYPTSYYVEMPGTTEPLGKMVKVEGKKDEHKGDFFLTTVQIARANLATMIYSH
FNSFTSIYSEQEMTGGLNDAQFNRVNQFYMETAQNTAIYQAFKLANKPYELKYEGVYVLDIAKNSTFKNKLELADTITAV
NGQQFTSSADMIAYVSKQKVGDTVKIEYTRIDGTKRKSTGKYIKIANGKTGIGISLVDHTEVVTTPKVTVNAGSIGGPSA
GMMFTLEIYSQLTGKDLRNGREIAGTGTIEHDGSIGQIGGVDKKVATASKEGAKVFLVPDSGTKKESSNNYLGAKAAAKK
LKTKMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=56499 LILO_RS11090 WP_015427190.1 2301055..2302083(-) (sepM) [Lactococcus lactis subsp. lactis IO-1]
ATGAAAAAAAATAAAAAAATTAATCCCAAATTAAAATGGGGAATCTCGATTGGTCTAATTGTTGTTGCCCTTTTAGCTTT
ATTTTATCCAACAAGTTACTATGTGGAAATGCCCGGAACAACCGAGCCTTTAGGAAAAATGGTCAAAGTTGAAGGCAAAA
AAGATGAACATAAAGGTGATTTTTTCCTGACGACTGTCCAAATTGCACGAGCAAATCTTGCTACAATGATTTACAGCCAT
TTTAATAGTTTTACAAGCATTTACAGTGAGCAAGAAATGACTGGTGGACTTAACGACGCACAGTTCAACCGTGTCAACCA
GTTTTACATGGAAACGGCACAGAATACAGCGATTTATCAAGCTTTTAAATTAGCTAATAAACCTTATGAACTTAAATATG
AAGGCGTTTATGTCCTTGATATTGCCAAAAATTCGACCTTTAAAAATAAGCTAGAACTTGCAGATACGATTACAGCAGTC
AATGGTCAACAGTTTACATCAAGTGCCGACATGATTGCTTATGTTTCCAAACAAAAAGTCGGTGATACAGTAAAGATTGA
ATACACGAGAATTGACGGCACAAAGCGCAAGTCAACTGGCAAATACATCAAAATTGCTAATGGAAAAACAGGAATTGGGA
TCAGCCTAGTTGACCATACTGAAGTCGTGACGACTCCAAAAGTTACTGTCAACGCGGGTTCAATCGGTGGTCCCTCTGCG
GGGATGATGTTTACACTAGAAATTTACAGTCAGTTGACAGGAAAAGATTTGCGAAACGGTCGCGAAATTGCTGGAACTGG
GACGATTGAACATGACGGAAGCATTGGCCAAATCGGCGGTGTTGATAAAAAAGTAGCCACAGCGAGCAAAGAAGGGGCAA
AGGTCTTCTTAGTGCCTGACTCAGGCACCAAAAAGGAAAGTAGCAACAATTACCTTGGAGCCAAAGCCGCAGCTAAAAAA
CTAAAAACGAAGATGAAAATCGTTCCCGTCAAAACTATTCAGGACGCTTTAGATTATTTAGAAAAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(157-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.696

100

0.491

Multiple sequence alignment