Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KHQ31_RS06475 Genome accession   NZ_CP074441
Coordinates   1248089..1249462 (-) Length   457 a.a.
NCBI ID   WP_213408778.1    Uniprot ID   -
Organism   Weissella ceti strain CECT 7719     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1243089..1254462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHQ31_RS06465 (KHQ31_06465) secA 1243924..1246290 (-) 2367 WP_213408776.1 preprotein translocase subunit SecA -
  KHQ31_RS06470 (KHQ31_06470) gltX 1246527..1248020 (-) 1494 WP_213408777.1 glutamate--tRNA ligase -
  KHQ31_RS06475 (KHQ31_06475) radA 1248089..1249462 (-) 1374 WP_213408778.1 DNA repair protein RadA Machinery gene
  KHQ31_RS06480 (KHQ31_06480) - 1249477..1250019 (-) 543 WP_213408779.1 dUTP diphosphatase -
  KHQ31_RS06485 (KHQ31_06485) - 1250112..1250387 (-) 276 WP_213408780.1 GNAT family N-acetyltransferase -
  KHQ31_RS06490 (KHQ31_06490) - 1250389..1250943 (-) 555 WP_213408781.1 NlpC/P60 family protein -
  KHQ31_RS06495 (KHQ31_06495) - 1251028..1251807 (-) 780 WP_213408782.1 CHAP domain-containing protein -
  KHQ31_RS06500 (KHQ31_06500) - 1252149..1254305 (-) 2157 WP_213408783.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49276.39 Da        Isoelectric Point: 5.1491

>NTDB_id=564939 KHQ31_RS06475 WP_213408778.1 1248089..1249462(-) (radA) [Weissella ceti strain CECT 7719]
MAKVKTQFVCSNCGAVSQRYMGRCPSCGAWGTLVEEVQQPEKADRKSRVNLAGEIAKFEKLADINIEETLRVTSNSNEFD
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGSLANAGQKVLYVSGEESASQIKLRAERLGVQGDADFYLYPETDMSQIR
KAIDELKPDLVVIDSIQTMQEPDVQSSVGSVAQIRETTAELLQIAKTNGVTIFIVGHVTKEGNIAGPKILEHMVDTVLYF
EGDNQRSFRLLRAVKNRFGSTNELGVFEMEHEGLAEVANPSQMFLEERLEDASGSAVVVALEGTRPVLVELQALVTPTVF
GNAQRTAAGIDRNRVSVLMAVLEKRANLLLQNQDAYVRAAGGVRLDEPAIDLAIAMAIASSYRDKGTRPGDAFVGEIGLT
GEIRRVPRLHDRIVEAQTLGFKRVFVPMSGLTAKDKVGGIEVVGVKTLADALRLGLD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=564939 KHQ31_RS06475 WP_213408778.1 1248089..1249462(-) (radA) [Weissella ceti strain CECT 7719]
ATGGCTAAAGTTAAAACGCAATTCGTGTGTTCAAACTGTGGCGCAGTATCACAACGTTACATGGGACGTTGTCCAAGCTG
TGGGGCATGGGGCACATTGGTCGAAGAAGTTCAACAACCTGAAAAGGCAGATCGTAAGTCACGTGTTAATTTGGCAGGTG
AAATTGCGAAGTTCGAAAAGCTAGCAGATATTAATATAGAAGAAACACTACGTGTCACGTCTAATTCAAATGAATTTGAT
CGTGTCTTAGGTGGTGGAATCGTACCAGGTTCACTAGTCTTGATTGGTGGTGATCCAGGGATTGGTAAGTCAACATTGTT
GCTACAAGTTTCTGGTTCATTGGCTAATGCTGGCCAAAAAGTACTGTACGTTTCTGGTGAAGAAAGTGCGTCACAAATCA
AGTTACGTGCCGAGCGTCTTGGTGTTCAAGGTGATGCGGACTTCTACCTATATCCCGAAACTGACATGAGTCAAATTCGT
AAAGCGATTGATGAATTAAAGCCGGATTTGGTCGTTATTGATTCAATTCAAACGATGCAAGAACCCGACGTACAATCAAG
TGTTGGTTCAGTGGCACAAATTCGTGAAACAACTGCGGAATTGTTGCAGATTGCAAAGACTAATGGTGTGACAATCTTCA
TCGTGGGGCACGTGACCAAAGAAGGTAACATTGCGGGACCAAAGATTTTGGAACACATGGTTGATACCGTTTTGTATTTT
GAAGGTGACAACCAACGTAGTTTCCGTCTATTACGTGCAGTTAAAAATCGTTTTGGCTCAACCAATGAATTAGGTGTCTT
TGAAATGGAACATGAAGGATTAGCGGAAGTTGCGAATCCTTCACAAATGTTCCTAGAAGAACGTTTGGAAGATGCTAGTG
GATCTGCCGTGGTCGTTGCTTTAGAAGGAACACGTCCTGTGCTTGTTGAATTACAGGCATTGGTGACACCGACGGTATTT
GGAAATGCACAACGTACGGCTGCGGGTATTGACCGCAATCGTGTATCAGTATTAATGGCGGTACTTGAAAAGCGCGCCAA
CTTATTACTACAAAACCAAGATGCATATGTCCGTGCAGCGGGTGGAGTTCGACTGGATGAACCAGCGATTGACCTTGCGA
TTGCTATGGCGATTGCATCTAGTTACCGCGATAAGGGGACGCGTCCAGGCGATGCCTTTGTCGGTGAAATTGGACTGACG
GGAGAAATTCGTCGTGTGCCACGTTTGCATGACCGAATCGTTGAAGCACAGACATTGGGCTTCAAGCGTGTTTTCGTGCC
GATGTCAGGTCTAACAGCCAAGGATAAGGTCGGTGGTATTGAGGTTGTTGGCGTTAAAACATTAGCTGATGCATTGCGTT
TAGGACTAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(82-222)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

62.252

99.125

0.617
  radA Streptococcus mitis SK321

62.252

99.125

0.617
  radA Streptococcus pneumoniae Rx1

62.252

99.125

0.617
  radA Streptococcus pneumoniae D39

62.252

99.125

0.617
  radA Streptococcus pneumoniae R6

62.252

99.125

0.617
  radA Streptococcus pneumoniae TIGR4

62.252

99.125

0.617
  radA Bacillus subtilis subsp. subtilis str. 168

58.862

100

0.589