Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KHQ31_RS02000 Genome accession   NZ_CP074441
Coordinates   388572..390383 (+) Length   603 a.a.
NCBI ID   WP_213409333.1    Uniprot ID   -
Organism   Weissella ceti strain CECT 7719     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 383572..395383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHQ31_RS01965 (KHQ31_01965) - 383817..384659 (+) 843 WP_213409326.1 Cof-type HAD-IIB family hydrolase -
  KHQ31_RS01970 (KHQ31_01970) - 384652..384864 (+) 213 WP_213409327.1 hypothetical protein -
  KHQ31_RS01975 (KHQ31_01975) - 384848..385558 (+) 711 WP_213409328.1 CPBP family intramembrane glutamic endopeptidase -
  KHQ31_RS01980 (KHQ31_01980) - 385595..386113 (+) 519 WP_213409329.1 hypothetical protein -
  KHQ31_RS01985 (KHQ31_01985) - 386122..386550 (+) 429 WP_213409330.1 phosphate-starvation-inducible PsiE family protein -
  KHQ31_RS01990 (KHQ31_01990) - 386619..387314 (+) 696 WP_213409331.1 adaptor protein MecA -
  KHQ31_RS01995 (KHQ31_01995) - 387522..388358 (+) 837 WP_213409332.1 VOC family protein -
  KHQ31_RS02000 (KHQ31_02000) pepF 388572..390383 (+) 1812 WP_213409333.1 oligoendopeptidase F Regulator
  KHQ31_RS02005 (KHQ31_02005) - 390470..390826 (+) 357 WP_213409334.1 DUF948 domain-containing protein -
  KHQ31_RS02010 (KHQ31_02010) - 390859..391587 (+) 729 WP_213409335.1 hypothetical protein -
  KHQ31_RS02015 (KHQ31_02015) - 391691..392791 (-) 1101 WP_213409336.1 Xaa-Pro peptidase family protein -
  KHQ31_RS02020 (KHQ31_02020) ccpA 392968..393969 (+) 1002 WP_213409337.1 catabolite control protein A -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68391.04 Da        Isoelectric Point: 4.2254

>NTDB_id=564928 KHQ31_RS02000 WP_213409333.1 388572..390383(+) (pepF) [Weissella ceti strain CECT 7719]
MSQELLQRDELPTTMTWDLSTIFPNDDAWEDMFEDVAERLESADYFAETVTNSGPQLLGALQYGLNLMRDLEKVYVYASM
KSDQDTANGYYQALNNRAEALAAQVGAAIAFFDPAILALSEDELAALFAETPELNQFEHYFESLLTQRGHVLPAEQETLL
AAAGDIFGASQRTFSVLDNADIQFGRVENADGEWEQLSNGVYSKLLESTDGRVRRDTFQTFYESYIALENTLASTLASHV
KGHNYMARVHNYETARQASLANNHVPEAVYETLVDETNKALPLLHRYVALRKRLLGVSELHSYDLYTPILGEPDYAIDYT
SAQATALEALRPLGDDYLDIVNKAFDERWIDVPENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLYTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLDTIEDKALRAFVLNQYLDGVKGTMFRQTQFAEFEQWMHHQDAQGVPL
TADVLNEAYAELNQRYYGPALEVDPEIANEWSRIPHFYYNFYVFQYSTGFAAATAMAHEMKTKGTSAVDAYKQYLKAGSS
AFPIDVMKKAGVDMMQPTYLQETFDIFEERLNEFEALVNELDM

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=564928 KHQ31_RS02000 WP_213409333.1 388572..390383(+) (pepF) [Weissella ceti strain CECT 7719]
ATGAGCCAAGAACTTTTACAACGAGATGAACTTCCAACGACAATGACGTGGGACCTATCAACAATTTTTCCAAATGATGA
TGCATGGGAAGATATGTTTGAAGATGTTGCTGAACGTCTAGAATCAGCAGACTACTTTGCTGAGACAGTTACGAATTCAG
GACCACAACTATTAGGGGCACTACAATACGGATTGAACCTAATGCGTGATTTAGAAAAGGTCTATGTATATGCATCAATG
AAGAGTGATCAAGATACAGCCAATGGTTACTACCAAGCTTTGAACAATCGTGCTGAAGCATTGGCAGCACAAGTTGGAGC
AGCGATTGCGTTTTTTGATCCAGCCATCTTGGCTTTATCAGAAGATGAATTGGCCGCATTGTTTGCTGAAACACCTGAAT
TGAACCAATTTGAACACTACTTTGAAAGTTTGTTGACGCAACGTGGTCACGTACTACCTGCAGAACAAGAAACATTGTTG
GCTGCTGCGGGGGACATTTTTGGTGCATCACAACGCACATTCAGTGTCTTGGATAATGCGGACATTCAATTTGGGCGTGT
AGAAAATGCTGATGGTGAATGGGAACAACTGTCAAACGGTGTTTACTCAAAGTTATTGGAATCAACTGACGGACGTGTTC
GTCGTGATACATTCCAAACATTCTACGAATCATACATTGCACTAGAAAACACATTGGCTTCAACATTGGCTAGTCATGTA
AAGGGCCACAACTACATGGCCCGTGTGCATAACTACGAAACAGCACGTCAAGCATCATTGGCAAACAACCATGTGCCAGA
AGCTGTTTATGAAACATTAGTTGATGAAACTAACAAAGCATTGCCATTGCTACACCGTTATGTTGCATTGCGTAAGCGTT
TGTTGGGTGTTTCAGAACTACATTCATACGACTTGTACACACCAATCTTGGGTGAACCTGATTACGCAATTGATTACACA
TCAGCGCAAGCAACTGCGCTAGAAGCATTGCGTCCGTTAGGGGATGATTACTTAGATATCGTTAACAAGGCATTTGATGA
ACGCTGGATTGACGTGCCAGAAAACAAGGGAAAGCGTTCAGGTGCTTACTCAGGTGGTTCATATGACACAAACCCATTCA
TTTTGTTGAACTGGGTGGATAATTTGAACAACTTGTACACATTGGTTCACGAAATGGGACACAGTGTACACAGTTACTTA
ACGCGTCAAAACCAACCTTATCACTATGGTGATTACCCAATCTTCTTGGCTGAAATTGCATCAACGACAAATGAAAATCT
CCTAACTGACTACTTGTTGGATACCATTGAAGATAAGGCGTTGCGTGCCTTTGTCTTGAACCAATACTTAGACGGTGTGA
AGGGAACAATGTTCCGTCAAACACAATTTGCTGAATTTGAACAATGGATGCACCATCAAGATGCACAAGGTGTACCGTTG
ACTGCGGACGTCCTAAATGAAGCATACGCTGAATTGAACCAACGCTACTACGGTCCAGCCCTTGAAGTTGATCCAGAAAT
TGCGAATGAATGGTCACGTATTCCACACTTCTACTACAACTTCTATGTCTTCCAATACAGTACTGGTTTTGCAGCCGCAA
CTGCGATGGCTCATGAAATGAAGACAAAGGGAACTTCAGCAGTAGATGCCTACAAGCAATACTTGAAGGCTGGTTCATCA
GCGTTCCCGATTGATGTTATGAAGAAGGCTGGCGTTGACATGATGCAACCAACTTACTTGCAAGAAACTTTCGATATTTT
TGAAGAACGCTTGAATGAGTTTGAAGCATTGGTAAATGAATTAGATATGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(116-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.108

98.342

0.512